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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZFAND6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
111.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
106.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
101.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
100.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
98.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
93.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
93.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
91.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
91.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
87.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
83.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
83.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
82.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
80.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
80.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
79.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
79.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
79.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
78.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
78.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
78.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
78.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
77.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
76.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
75.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
75.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
72.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
72.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
72.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
72.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
72.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
71.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
71.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
70.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
70.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
69.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
69.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
69.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
68.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
68.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
67.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
67.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
67.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
66.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
66.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
65.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
65.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
65.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
65.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
65.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
65.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
65.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
65.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
65.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
64.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
64.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
64.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
63.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
63.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
63.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
63.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
62.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
62.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
62.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
62.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
62.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
62.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
62.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
61.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
61.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
61.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
60.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
60.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
60.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
60.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
60.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
59.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
59.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
59.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
58.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
58.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
58.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
58.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
57.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
57.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
56.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
56.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
56.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
56.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
55.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
55.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
55.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
55.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
55.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
55.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
54.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
54.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
54.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
53.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
53.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
53.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
53.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
53.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
53.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
52.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
52.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
52.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
52.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
52.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
51.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
50.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
50.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
50.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
50.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
50.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
50.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
50.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
50.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
50.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
50.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
50.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
49.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
49.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
49.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
49.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
49.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
48.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
48.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
48.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
47.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
47.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
47.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
47.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
46.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
46.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
46.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
46.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
46.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
46.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
46.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
46.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
45.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
45.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
45.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
45.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
45.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
45.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
45.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
45.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
45.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
45.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
45.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
44.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
44.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
44.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
44.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
44.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
44.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
44.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
43.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
43.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
43.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
43.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
43.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
43.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
43.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
42.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
42.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
42.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
42.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
42.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
41.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
41.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
40.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
40.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
40.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
40.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
40.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
40.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
40.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
39.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
39.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
39.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
38.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
38.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
38.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
38.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
38.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
37.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
37.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
37.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
37.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
37.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
36.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
35.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
35.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
35.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
35.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
35.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
35.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
35.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
35.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
35.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
35.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
34.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
34.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
34.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
34.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
33.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
33.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
33.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
32.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
31.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
30.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
29.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
27.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
26.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZFAND6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.6
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
112.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
105.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
96.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
93.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
90.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
87.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
84.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
83.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
80.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
80.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
77.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
75.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
75.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
74.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
74.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
73.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
73.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
73.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
72.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
72.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
71.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
71.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
70.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
70.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
70.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
69.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
68.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
68.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
68.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
67.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
67.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
67.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
67.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
66.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
66.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
65.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
65.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
65.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
65.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
64.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
64.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
64.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
64.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
63.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
63.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
62.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
62.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
61.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
61.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
61.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
61.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
60.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
60.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
59.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
59.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
59.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
58.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
58.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
58.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
58.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
57.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
57.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
57.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
57.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
57.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
56.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
56.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
56.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
56.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
56.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
56.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
56.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
56.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
56.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
55.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
55.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
55.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
54.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
54.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
54.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
54.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
54.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
54.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
53.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
53.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
53.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
53.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
53.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
52.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
52.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
52.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
52.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
52.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
52.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
52.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
52.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
51.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
51.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
51.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
51.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
50.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
50.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
50.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
50.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
49.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
49.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
49.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
49.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
49.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
49.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
48.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
48.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
48.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
48.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
48.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
47.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
47.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
47.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
47.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
47.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
46.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
46.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
46.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
46.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
46.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
46.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
46.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
45.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
45.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
45.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
45.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
45.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
45.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
45.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
45.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
44.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
44.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
44.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
44.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
44.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
43.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
43.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
43.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
43.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
43.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
43.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
42.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
42.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
42.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
41.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
41.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
40.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
40.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
40.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
39.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
38.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
38.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
38.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
37.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
37.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
37.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
36.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
35.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
35.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
34.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
33.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
33.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
29.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
2.3
1025
Tumor
1.2
983
Tumor
1.1
957
Tumor
1.1
937
Tumor
1.1
1013
Tumor
1.1
815
Tumor
1.1
635
Tumor
1.1
965
Tumor
1.0
537
Tumor
1.0
1021
Tumor
0.9
951
Tumor
0.9
627
Tumor
0.9
553
Tumor
0.9
913
Tumor
0.8
473
Tumor
0.8
527
Tumor
0.8
487
Tumor
0.8
921
Tumor
0.8
661
Tumor
0.8
533
Tumor
0.8
1031
Tumor
0.7
617
Tumor
0.7
851
Tumor
0.7
823
Tumor
0.7
975
Tumor
0.7
447
Tumor
0.7
545
Tumor
0.7
363
Tumor
0.7
1041
Tumor
0.6
746
Normal
0.6
1043
Tumor
0.6
443
Tumor
0.6
865
Tumor
0.6
131
Tumor
0.6
285
Tumor
0.6
493
Tumor
0.6
415
Tumor
0.6
355
Tumor
0.6
461
Tumor
0.6
431
Tumor
0.6
477
Tumor
0.6
517
Tumor
0.6
411
Tumor
0.5
497
Tumor
0.5
615
Tumor
0.5
1015
Tumor
0.5
663
Tumor
0.5
135
Tumor
0.5
536
Normal
0.5
785
Tumor
0.5
535
Tumor
0.5
911
Tumor
0.5
498
Normal
0.5
817
Tumor
0.5
451
Tumor
0.5
881
Tumor
0.5
221
Tumor
0.4
745
Tumor
0.4
425
Tumor
0.4
471
Tumor
0.4
967
Tumor
0.4
877
Tumor
0.4
863
Tumor
0.4
923
Tumor
0.4
283
Tumor
0.4
777
Tumor
0.4
641
Tumor
0.4
697
Tumor
0.4
113
Tumor
0.4
393
Tumor
0.4
1016
Normal
0.3
427
Tumor
0.3
488
Normal
0.3
515
Tumor
0.3
327
Tumor
0.3
873
Tumor
0.3
698
Normal
0.3
628
Normal
0.3
367
Tumor
0.3
978
Normal
0.3
883
Tumor
0.3
977
Tumor
0.3
966
Normal
0.3
737
Tumor
0.3
955
Tumor
0.3
982
Normal
0.3
756
Normal
0.3
984
Normal
0.2
161
Tumor
0.2
224
Normal
0.2
525
Tumor
0.2
968
Normal
0.2
484
Normal
0.2
523
Tumor
0.2
445
Tumor
0.2
573
Tumor
0.2
492
Normal
0.2
915
Tumor
0.2
494
Normal
0.2
958
Normal
0.2
778
Normal
0.2
953
Tumor
0.2
738
Normal
0.2
964
Normal
0.2
227
Tumor
0.2
695
Tumor
0.2
534
Normal
0.2
228
Normal
0.2
742
Normal
0.2
647
Tumor
0.2
1014
Normal
0.2
286
Normal
0.2
857
Tumor
0.2
636
Normal
0.2
212
Normal
0.2
786
Normal
0.1
642
Normal
0.1
925
Tumor
0.1
861
Tumor
0.1
618
Normal
0.1
448
Normal
0.1
481
Tumor
0.1
123
Tumor
0.1
554
Normal
0.1
217
Tumor
0.1
963
Tumor
0.1
867
Tumor
0.1
277
Tumor
0.1
528
Normal
0.1
491
Tumor
0.1
483
Tumor
0.1
824
Normal
0.1
922
Normal
0.1
858
Normal
0.1
868
Normal
0.1
816
Normal
0.1
195
Tumor
0.1
852
Normal
0.1
1044
Normal
0.0
376
Normal
0.0
137
Tumor
0.0
1045
Tumor
0.0
433
Tumor
0.0
943
Tumor
0.0
284
Normal
0.0
926
Normal
0.0
331
Tumor
0.0
721
Tumor
0.0
446
Normal
0.0
648
Normal
0.0
715
Tumor
0.0
127
Tumor
0.0
357
Tumor
0.0
385
Tumor
0.0
413
Tumor
0.0
864
Normal
0.0
538
Normal
0.0
664
Normal
0.0
616
Normal
0.0
938
Normal
0.0
567
Tumor
0.0
546
Normal
0.0
952
Normal
0.0
171
Tumor
0.0
744
Normal
0.0
474
Normal
0.0
918
Normal
0.0
743
Tumor
0.0
436
Normal
0.0
884
Normal
0.0
482
Normal
0.0
297
Tumor
0.0
813
Tumor
0.0
944
Normal
0.0
696
Normal
-0.1
981
Tumor
-0.1
916
Normal
-0.1
434
Normal
-0.1
685
Tumor
-0.1
383
Tumor
-0.1
218
Normal
-0.1
723
Tumor
-0.1
128
Normal
-0.1
472
Normal
-0.1
666
Normal
-0.1
755
Tumor
-0.1
412
Normal
-0.1
356
Normal
-0.1
572
Normal
-0.1
866
Normal
-0.1
1028
Normal
-0.1
421
Tumor
-0.1
462
Normal
-0.1
1046
Normal
-0.1
222
Normal
-0.1
191
Tumor
-0.1
1032
Normal
-0.1
672
Normal
-0.1
464
Normal
-0.1
722
Normal
-0.1
232
Normal
-0.1
513
Tumor
-0.1
112
Tumor
-0.1
714
Normal
-0.1
261
Tumor
-0.1
455
Tumor
-0.1
1022
Normal
-0.1
728
Normal
-0.1
271
Tumor
-0.1
196
Normal
-0.1
111
Normal
-0.1
882
Normal
-0.1
126
Normal
-0.1
716
Normal
-0.1
518
Normal
-0.2
364
Normal
-0.2
878
Normal
-0.2
391
Tumor
-0.2
465
Tumor
-0.2
571
Tumor
-0.2
924
Normal
-0.2
444
Normal
-0.2
466
Normal
-0.2
213
Tumor
-0.2
456
Normal
-0.2
862
Normal
-0.2
313
Tumor
-0.2
686
Normal
-0.2
557
Tumor
-0.2
392
Normal
-0.2
526
Normal
-0.2
1026
Normal
-0.2
341
Tumor
-0.2
148
Normal
-0.2
395
Tumor
-0.2
914
Normal
-0.2
353
Tumor
-0.2
422
Normal
-0.2
662
Normal
-0.2
976
Normal
-0.2
568
Normal
-0.2
874
Normal
-0.2
954
Normal
-0.2
814
Normal
-0.2
368
Normal
-0.2
343
Tumor
-0.2
328
Normal
-0.2
114
Normal
-0.2
563
Tumor
-0.2
558
Normal
-0.3
452
Normal
-0.3
818
Normal
-0.3
463
Tumor
-0.3
124
Normal
-0.3
478
Normal
-0.3
125
Tumor
-0.3
416
Normal
-0.3
145
Tumor
-0.3
262
Normal
-0.3
432
Normal
-0.3
258
Normal
-0.3
665
Tumor
-0.3
298
Normal
-0.3
1042
Normal
-0.3
564
Normal
-0.3
375
Tumor
-0.3
671
Tumor
-0.3
192
Normal
-0.3
396
Normal
-0.3
956
Normal
-0.3
514
Normal
-0.4
468
Normal
-0.4
384
Normal
-0.4
574
Normal
-0.4
524
Normal
-0.4
467
Tumor
-0.4
727
Tumor
-0.4
912
Normal
-0.4
724
Normal
-0.4
1027
Tumor
-0.4
267
Tumor
-0.4
414
Normal
-0.4
141
Tumor
-0.4
428
Normal
-0.4
142
Normal
-0.4
214
Normal
-0.4
361
Tumor
-0.4
713
Tumor
-0.4
132
Normal
-0.4
394
Normal
-0.4
231
Tumor
-0.4
162
Normal
-0.4
186
Normal
-0.4
424
Normal
-0.4
362
Normal
-0.4
257
Tumor
-0.4
278
Normal
-0.5
172
Normal
-0.5
426
Normal
-0.5
516
Normal
-0.5
435
Tumor
-0.5
386
Normal
-0.5
136
Normal
-0.5
917
Tumor
-0.5
187
Tumor
-0.5
268
Normal
-0.5
147
Tumor
-0.5
366
Normal
-0.5
188
Normal
-0.5
741
Tumor
-0.5
223
Tumor
-0.5
423
Tumor
-0.5
138
Normal
-0.5
388
Normal
-0.5
272
Normal
-0.5
358
Normal
-0.6
387
Tumor
-0.6
354
Normal
-0.6
311
Tumor
-0.6
312
Normal
-0.6
146
Normal
-0.6
365
Tumor
-0.6
332
Normal
-0.6
185
Tumor
-0.6
352
Normal
-0.6
344
Normal
-0.7
351
Tumor
-0.8
342
Normal
-0.8
314
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
