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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPL28 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
225.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
136.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
127.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
126.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
123.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
119.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
117.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
115.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
107.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
102.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
100.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
100.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
99.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
97.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
96.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
94.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
94.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
91.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
91.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
90.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
89.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
89.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
89.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
88.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
86.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
85.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
82.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
80.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
79.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
78.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
78.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
77.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
77.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
77.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
77.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
76.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
76.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
76.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
75.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
74.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
74.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
73.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
73.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
72.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
72.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
72.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
72.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
72.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
72.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
72.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
71.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
71.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
70.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
70.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
69.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
69.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
69.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
69.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
69.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
68.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
68.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
68.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
68.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
67.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
67.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
67.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
67.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
67.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
67.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
67.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
66.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
66.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
66.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
66.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
66.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
65.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
65.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
65.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
65.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
65.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
65.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
64.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
64.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
64.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
64.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
64.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
64.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
64.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
64.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
64.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
63.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
63.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
63.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
63.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
62.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
62.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
62.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
62.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
62.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
62.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
62.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
62.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
61.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
61.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
61.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
61.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
61.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
60.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
60.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
60.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
60.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
60.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
60.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
60.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
60.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
59.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
59.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
59.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
59.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
59.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
58.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
58.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
58.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
58.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
58.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
58.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
58.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
58.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
57.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
57.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
57.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
57.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
57.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
57.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
57.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
57.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
57.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
56.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
56.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
56.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
56.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
56.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
56.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
55.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
55.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
55.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
55.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
54.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
54.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
54.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
54.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
53.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
53.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
53.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
53.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
53.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
53.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
53.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
53.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
53.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
53.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
52.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
52.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
52.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
52.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
52.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
52.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
52.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
51.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
51.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
51.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
51.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
51.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
51.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
51.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
50.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
50.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
50.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
50.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
50.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
49.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
49.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
49.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
49.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
49.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
49.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
49.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
49.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
48.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
48.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
48.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
48.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
47.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
47.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
47.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
46.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
46.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
46.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
45.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
45.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
45.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
45.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
45.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
45.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
45.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
45.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
44.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
44.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
44.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
44.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
44.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
44.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
43.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
43.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
43.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
43.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
43.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
43.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
42.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
42.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
42.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
42.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
42.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
41.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
40.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
40.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
40.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
40.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
40.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
40.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
40.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
39.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
38.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
38.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
38.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
37.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
37.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
37.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
36.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
35.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
35.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
34.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
34.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
34.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
34.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
33.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
31.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
30.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
29.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
29.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPL28 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.1
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
168.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
130.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
125.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
101.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
100.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
100.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
90.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
87.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
87.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
84.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
84.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
81.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
81.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
79.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
75.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
74.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
71.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
71.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
69.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
66.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
66.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
65.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
64.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
63.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
63.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
63.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
63.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
63.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
62.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
61.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
61.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
61.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
59.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
59.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
59.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
58.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
56.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
56.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
54.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
53.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
53.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
53.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
52.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
52.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
52.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
51.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
50.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
50.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
50.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
50.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
49.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
49.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
49.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
48.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
48.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
48.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
48.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
47.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
45.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
45.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
45.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
44.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
44.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
43.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
43.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
43.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
43.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
43.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
43.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
43.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
42.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
42.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
41.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
41.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
41.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
40.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
39.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
39.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
39.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
38.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
37.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
36.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
34.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
34.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
33.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
28.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
27.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.2
473
Tumor
1.2
865
Tumor
1.2
361
Tumor
1.0
557
Tumor
0.8
713
Tumor
0.8
393
Tumor
0.8
741
Tumor
0.8
267
Tumor
0.8
967
Tumor
0.8
367
Tumor
0.7
435
Tumor
0.7
351
Tumor
0.7
231
Tumor
0.7
743
Tumor
0.7
227
Tumor
0.7
411
Tumor
0.7
477
Tumor
0.7
171
Tumor
0.6
665
Tumor
0.6
427
Tumor
0.6
127
Tumor
0.6
123
Tumor
0.6
277
Tumor
0.6
353
Tumor
0.6
571
Tumor
0.6
663
Tumor
0.6
911
Tumor
0.5
685
Tumor
0.5
363
Tumor
0.5
671
Tumor
0.5
915
Tumor
0.5
525
Tumor
0.5
413
Tumor
0.5
467
Tumor
0.5
981
Tumor
0.5
1025
Tumor
0.5
937
Tumor
0.5
1021
Tumor
0.5
327
Tumor
0.5
635
Tumor
0.4
221
Tumor
0.4
357
Tumor
0.4
451
Tumor
0.4
187
Tumor
0.4
957
Tumor
0.4
463
Tumor
0.4
533
Tumor
0.4
395
Tumor
0.4
113
Tumor
0.4
423
Tumor
0.4
553
Tumor
0.4
627
Tumor
0.4
391
Tumor
0.4
285
Tumor
0.4
355
Tumor
0.4
497
Tumor
0.4
913
Tumor
0.3
195
Tumor
0.3
951
Tumor
0.3
641
Tumor
0.3
861
Tumor
0.3
883
Tumor
0.3
145
Tumor
0.3
491
Tumor
0.3
481
Tumor
0.3
573
Tumor
0.3
537
Tumor
0.3
213
Tumor
0.3
112
Tumor
0.3
535
Tumor
0.3
1032
Normal
0.2
925
Tumor
0.2
257
Tumor
0.2
331
Tumor
0.2
567
Tumor
0.2
383
Tumor
0.2
431
Tumor
0.2
271
Tumor
0.2
1031
Tumor
0.2
785
Tumor
0.2
921
Tumor
0.2
493
Tumor
0.2
618
Normal
0.2
642
Normal
0.2
965
Tumor
0.2
721
Tumor
0.2
867
Tumor
0.2
715
Tumor
0.2
261
Tumor
0.2
375
Tumor
0.2
465
Tumor
0.2
851
Tumor
0.2
724
Normal
0.2
185
Tumor
0.2
365
Tumor
0.2
698
Normal
0.2
191
Tumor
0.1
223
Tumor
0.1
1042
Normal
0.1
977
Tumor
0.1
147
Tumor
0.1
487
Tumor
0.1
647
Tumor
0.1
471
Tumor
0.1
278
Normal
0.1
464
Normal
0.1
617
Tumor
0.1
527
Tumor
0.1
517
Tumor
0.1
923
Tumor
0.1
214
Normal
0.1
462
Normal
0.1
128
Normal
0.1
356
Normal
0.1
944
Normal
0.1
615
Tumor
0.1
162
Normal
0.1
953
Tumor
0.1
416
Normal
0.1
432
Normal
0.1
312
Normal
0.1
817
Tumor
0.0
426
Normal
0.0
983
Tumor
0.0
141
Tumor
0.0
916
Normal
0.0
387
Tumor
0.0
188
Normal
0.0
444
Normal
0.0
823
Tumor
0.0
628
Normal
0.0
217
Tumor
0.0
422
Normal
0.0
1013
Tumor
0.0
314
Normal
0.0
172
Normal
0.0
364
Normal
0.0
455
Tumor
0.0
877
Tumor
0.0
466
Normal
0.0
1043
Tumor
0.0
286
Normal
0.0
745
Tumor
0.0
132
Normal
0.0
212
Normal
0.0
1022
Normal
0.0
211
Tumor
0.0
722
Normal
0.0
341
Tumor
0.0
963
Tumor
0.0
564
Normal
0.0
443
Tumor
0.0
1028
Normal
0.0
297
Tumor
0.0
313
Tumor
0.0
415
Tumor
0.0
1027
Tumor
0.0
514
Normal
0.0
918
Normal
0.0
563
Tumor
0.0
446
Normal
0.0
1016
Normal
0.0
695
Tumor
0.0
727
Tumor
0.0
523
Tumor
0.0
384
Normal
0.0
468
Normal
0.0
414
Normal
0.0
148
Normal
0.0
126
Normal
0.0
456
Normal
0.0
196
Normal
0.0
125
Tumor
0.0
447
Tumor
0.0
728
Normal
0.0
222
Normal
0.0
328
Normal
0.0
482
Normal
0.0
366
Normal
0.0
815
Tumor
0.0
513
Tumor
0.0
1046
Normal
0.0
362
Normal
0.0
114
Normal
-0.1
452
Normal
-0.1
696
Normal
-0.1
914
Normal
-0.1
385
Tumor
-0.1
1015
Tumor
-0.1
428
Normal
-0.1
857
Tumor
-0.1
1026
Normal
-0.1
982
Normal
-0.1
258
Normal
-0.1
224
Normal
-0.1
958
Normal
-0.1
388
Normal
-0.1
161
Tumor
-0.1
912
Normal
-0.1
332
Normal
-0.1
572
Normal
-0.1
723
Tumor
-0.1
697
Tumor
-0.1
545
Tumor
-0.1
272
Normal
-0.1
376
Normal
-0.1
636
Normal
-0.1
756
Normal
-0.1
124
Normal
-0.1
111
Normal
-0.1
358
Normal
-0.1
421
Tumor
-0.1
284
Normal
-0.1
554
Normal
-0.1
135
Tumor
-0.1
1014
Normal
-0.1
424
Normal
-0.1
445
Tumor
-0.1
448
Normal
-0.1
433
Tumor
-0.1
474
Normal
-0.1
436
Normal
-0.1
412
Normal
-0.1
661
Tumor
-0.1
714
Normal
-0.1
516
Normal
-0.1
396
Normal
-0.1
568
Normal
-0.1
232
Normal
-0.1
483
Tumor
-0.1
868
Normal
-0.1
186
Normal
-0.1
546
Normal
-0.1
716
Normal
-0.1
138
Normal
-0.1
558
Normal
-0.1
311
Tumor
-0.2
616
Normal
-0.2
488
Normal
-0.2
526
Normal
-0.2
864
Normal
-0.2
268
Normal
-0.2
648
Normal
-0.2
881
Tumor
-0.2
192
Normal
-0.2
368
Normal
-0.2
938
Normal
-0.2
786
Normal
-0.2
262
Normal
-0.2
394
Normal
-0.2
494
Normal
-0.2
1045
Tumor
-0.2
858
Normal
-0.2
434
Normal
-0.2
978
Normal
-0.2
228
Normal
-0.2
964
Normal
-0.2
777
Tumor
-0.2
738
Normal
-0.2
755
Tumor
-0.2
1044
Normal
-0.2
975
Tumor
-0.2
137
Tumor
-0.2
518
Normal
-0.2
873
Tumor
-0.2
386
Normal
-0.2
472
Normal
-0.2
574
Normal
-0.2
816
Normal
-0.2
666
Normal
-0.2
976
Normal
-0.2
528
Normal
-0.3
142
Normal
-0.3
298
Normal
-0.3
484
Normal
-0.3
878
Normal
-0.3
926
Normal
-0.3
874
Normal
-0.3
737
Tumor
-0.3
534
Normal
-0.3
955
Tumor
-0.3
742
Normal
-0.3
283
Tumor
-0.3
744
Normal
-0.3
956
Normal
-0.3
662
Normal
-0.3
392
Normal
-0.3
778
Normal
-0.3
136
Normal
-0.3
478
Normal
-0.3
425
Tumor
-0.3
814
Normal
-0.3
686
Normal
-0.3
954
Normal
-0.3
866
Normal
-0.3
943
Tumor
-0.3
664
Normal
-0.3
952
Normal
-0.3
352
Normal
-0.3
461
Tumor
-0.3
146
Normal
-0.3
218
Normal
-0.3
813
Tumor
-0.3
538
Normal
-0.3
498
Normal
-0.3
884
Normal
-0.3
818
Normal
-0.3
922
Normal
-0.4
746
Normal
-0.4
536
Normal
-0.4
342
Normal
-0.4
984
Normal
-0.4
524
Normal
-0.4
882
Normal
-0.4
966
Normal
-0.4
824
Normal
-0.4
515
Tumor
-0.4
862
Normal
-0.4
917
Tumor
-0.4
672
Normal
-0.4
354
Normal
-0.4
343
Tumor
-0.5
131
Tumor
-0.5
344
Normal
-0.5
492
Normal
-0.5
924
Normal
-0.5
968
Normal
-0.5
852
Normal
-0.6
863
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
