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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
135.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
99.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
83.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
76.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
74.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
71.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
70.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
65.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
63.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
62.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
61.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
60.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
57.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
54.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
54.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
53.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
52.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
51.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
44.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
42.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
42.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
36.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
36.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
35.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.3
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
104.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
87.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
83.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
77.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
76.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
75.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
72.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
59.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
55.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
55.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
55.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
52.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
51.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
49.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
48.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
47.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
45.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
45.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
43.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
42.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
41.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
41.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
40.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
38.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
36.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
35.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
33.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
31.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
29.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
2.0
957
Tumor
1.3
113
Tumor
1.0
231
Tumor
1.0
223
Tumor
0.9
125
Tumor
0.9
365
Tumor
0.9
913
Tumor
0.8
911
Tumor
0.8
213
Tumor
0.8
395
Tumor
0.8
877
Tumor
0.8
473
Tumor
0.8
283
Tumor
0.7
472
Normal
0.6
912
Normal
0.6
482
Normal
0.6
824
Normal
0.6
527
Tumor
0.6
421
Tumor
0.5
723
Tumor
0.5
394
Normal
0.5
222
Normal
0.5
217
Tumor
0.5
392
Normal
0.5
461
Tumor
0.5
728
Normal
0.5
818
Normal
0.5
738
Normal
0.5
953
Tumor
0.5
977
Tumor
0.5
742
Normal
0.5
361
Tumor
0.5
383
Tumor
0.5
388
Normal
0.5
257
Tumor
0.4
545
Tumor
0.4
858
Normal
0.4
211
Tumor
0.4
741
Tumor
0.4
1015
Tumor
0.4
191
Tumor
0.4
386
Normal
0.4
387
Tumor
0.4
425
Tumor
0.4
884
Normal
0.4
396
Normal
0.4
258
Normal
0.3
218
Normal
0.3
142
Normal
0.3
462
Normal
0.3
224
Normal
0.3
661
Tumor
0.3
528
Normal
0.3
882
Normal
0.3
262
Normal
0.3
161
Tumor
0.3
192
Normal
0.3
366
Normal
0.3
195
Tumor
0.3
384
Normal
0.3
956
Normal
0.2
814
Normal
0.2
196
Normal
0.2
427
Tumor
0.2
537
Tumor
0.2
187
Tumor
0.2
491
Tumor
0.2
137
Tumor
0.2
272
Normal
0.2
214
Normal
0.2
823
Tumor
0.2
484
Normal
0.2
1016
Normal
0.2
481
Tumor
0.2
391
Tumor
0.2
285
Tumor
0.2
128
Normal
0.2
498
Normal
0.2
816
Normal
0.2
982
Normal
0.2
755
Tumor
0.2
268
Normal
0.2
523
Tumor
0.2
744
Normal
0.2
517
Tumor
0.2
286
Normal
0.2
126
Normal
0.2
914
Normal
0.1
515
Tumor
0.1
534
Normal
0.1
221
Tumor
0.1
724
Normal
0.1
943
Tumor
0.1
525
Tumor
0.1
777
Tumor
0.1
648
Normal
0.1
851
Tumor
0.1
968
Normal
0.1
367
Tumor
0.1
478
Normal
0.1
368
Normal
0.1
284
Normal
0.1
362
Normal
0.1
494
Normal
0.1
124
Normal
0.1
756
Normal
0.1
983
Tumor
0.1
146
Normal
0.1
976
Normal
0.1
966
Normal
0.1
938
Normal
0.1
232
Normal
0.0
136
Normal
0.0
138
Normal
0.0
785
Tumor
0.0
271
Tumor
0.0
1014
Normal
0.0
663
Tumor
0.0
141
Tumor
0.0
162
Normal
0.0
492
Normal
0.0
981
Tumor
0.0
422
Normal
0.0
546
Normal
0.0
413
Tumor
0.0
145
Tumor
0.0
474
Normal
0.0
228
Normal
0.0
883
Tumor
0.0
488
Normal
0.0
852
Normal
-0.1
786
Normal
-0.1
978
Normal
-0.1
964
Normal
-0.1
111
Normal
-0.1
212
Normal
-0.1
1021
Tumor
-0.1
424
Normal
-0.1
778
Normal
-0.1
514
Normal
-0.1
878
Normal
-0.1
1042
Normal
-0.1
518
Normal
-0.1
132
Normal
-0.1
958
Normal
-0.1
428
Normal
-0.1
393
Tumor
-0.1
952
Normal
-0.1
477
Tumor
-0.1
554
Normal
-0.1
172
Normal
-0.1
123
Tumor
-0.1
664
Normal
-0.1
188
Normal
-0.1
955
Tumor
-0.1
857
Tumor
-0.2
965
Tumor
-0.2
185
Tumor
-0.2
666
Normal
-0.2
975
Tumor
-0.2
114
Normal
-0.2
813
Tumor
-0.2
817
Tumor
-0.2
538
Normal
-0.2
375
Tumor
-0.2
746
Normal
-0.2
944
Normal
-0.2
471
Tumor
-0.2
135
Tumor
-0.2
954
Normal
-0.2
385
Tumor
-0.3
513
Tumor
-0.3
745
Tumor
-0.3
526
Normal
-0.3
487
Tumor
-0.3
662
Normal
-0.3
423
Tumor
-0.3
376
Normal
-0.3
414
Normal
-0.3
984
Normal
-0.3
493
Tumor
-0.3
1013
Tumor
-0.3
951
Tumor
-0.4
127
Tumor
-0.4
937
Tumor
-0.4
665
Tumor
-0.4
497
Tumor
-0.4
186
Normal
-0.4
426
Normal
-0.4
148
Normal
-0.4
1041
Tumor
-0.4
1031
Tumor
-0.4
171
Tumor
-0.4
1026
Normal
-0.5
967
Tumor
-0.5
553
Tumor
-0.5
881
Tumor
-0.5
647
Tumor
-0.5
516
Normal
-0.5
147
Tumor
-0.6
524
Normal
-0.6
483
Tumor
-0.6
815
Tumor
-0.6
1022
Normal
-0.6
1028
Normal
-0.6
267
Tumor
-0.6
671
Tumor
-0.7
131
Tumor
-0.7
737
Tumor
-0.8
672
Normal
-0.8
261
Tumor
-0.8
963
Tumor
-0.8
112
Tumor
-0.8
1027
Tumor
-0.9
743
Tumor
-0.9
1032
Normal
-1.0
227
Tumor
-1.2
727
Tumor
-1.3
1025
Tumor
-1.7
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
455
Tumor
N/A
697
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.