We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FOLH1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FOLH1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.6
Number of samples
231
Samples
Sample
Description
TPM
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
413
Tumor
1.9
815
Tumor
1.6
463
Tumor
1.1
851
Tumor
0.9
443
Tumor
0.8
393
Tumor
0.8
285
Tumor
0.8
981
Tumor
0.7
672
Normal
0.7
451
Tumor
0.7
744
Normal
0.7
778
Normal
0.7
127
Tumor
0.7
866
Normal
0.6
513
Tumor
0.6
737
Tumor
0.6
957
Tumor
0.6
695
Tumor
0.6
786
Normal
0.5
1015
Tumor
0.5
954
Normal
0.5
435
Tumor
0.5
884
Normal
0.5
146
Normal
0.5
984
Normal
0.5
137
Tumor
0.5
162
Normal
0.5
824
Normal
0.5
1025
Tumor
0.5
926
Normal
0.5
818
Normal
0.5
172
Normal
0.5
488
Normal
0.5
1014
Normal
0.4
785
Tumor
0.4
965
Tumor
0.4
466
Normal
0.4
394
Normal
0.4
142
Normal
0.4
937
Tumor
0.4
124
Normal
0.4
191
Tumor
0.4
952
Normal
0.4
858
Normal
0.4
538
Normal
0.4
715
Tumor
0.4
1032
Normal
0.4
723
Tumor
0.4
976
Normal
0.4
344
Normal
0.4
498
Normal
0.4
444
Normal
0.4
376
Normal
0.4
666
Normal
0.4
755
Tumor
0.4
964
Normal
0.4
571
Tumor
0.4
136
Normal
0.4
878
Normal
0.4
185
Tumor
0.4
572
Normal
0.4
864
Normal
0.4
628
Normal
0.4
664
Normal
0.4
1046
Normal
0.4
298
Normal
0.4
478
Normal
0.3
332
Normal
0.3
141
Tumor
0.3
261
Tumor
0.3
665
Tumor
0.3
713
Tumor
0.3
196
Normal
0.3
145
Tumor
0.3
1044
Normal
0.3
436
Normal
0.3
161
Tumor
0.3
914
Normal
0.3
111
Normal
0.3
368
Normal
0.3
186
Normal
0.3
128
Normal
0.3
342
Normal
0.3
648
Normal
0.3
278
Normal
0.3
462
Normal
0.3
388
Normal
0.3
456
Normal
0.3
1016
Normal
0.2
126
Normal
0.2
431
Tumor
0.2
364
Normal
0.2
314
Normal
0.2
366
Normal
0.2
912
Normal
0.2
958
Normal
0.2
925
Tumor
0.2
432
Normal
0.2
392
Normal
0.2
568
Normal
0.2
967
Tumor
0.2
224
Normal
0.2
868
Normal
0.2
698
Normal
0.2
352
Normal
0.2
913
Tumor
0.2
147
Tumor
0.2
882
Normal
0.2
148
Normal
0.2
484
Normal
0.2
312
Normal
0.2
414
Normal
0.2
922
Normal
0.2
616
Normal
0.2
535
Tumor
0.2
192
Normal
0.2
267
Tumor
0.2
546
Normal
0.2
635
Tumor
0.2
113
Tumor
0.2
428
Normal
0.2
387
Tumor
0.2
465
Tumor
0.2
132
Normal
0.2
714
Normal
0.2
574
Normal
0.2
446
Normal
0.2
983
Tumor
0.2
863
Tumor
0.1
272
Normal
0.1
424
Normal
0.1
355
Tumor
0.1
564
Normal
0.1
1022
Normal
0.1
214
Normal
0.1
938
Normal
0.1
745
Tumor
0.1
258
Normal
0.1
448
Normal
0.1
468
Normal
0.1
756
Normal
0.1
277
Tumor
0.1
862
Normal
0.1
356
Normal
0.1
481
Tumor
0.1
412
Normal
0.1
494
Normal
0.1
354
Normal
0.1
738
Normal
0.1
742
Normal
0.1
534
Normal
0.1
268
Normal
0.1
722
Normal
0.1
865
Tumor
0.1
857
Tumor
0.1
923
Tumor
0.1
528
Normal
0.1
328
Normal
0.1
686
Normal
0.1
114
Normal
0.1
473
Tumor
0.1
472
Normal
0.1
918
Normal
0.1
357
Tumor
0.1
728
Normal
0.0
636
Normal
0.0
422
Normal
0.0
944
Normal
0.0
262
Normal
0.0
968
Normal
0.0
696
Normal
0.0
384
Normal
0.0
716
Normal
0.0
427
Tumor
0.0
464
Normal
0.0
1045
Tumor
0.0
814
Normal
0.0
514
Normal
0.0
367
Tumor
0.0
482
Normal
0.0
1026
Normal
0.0
1042
Normal
0.0
222
Normal
0.0
497
Tumor
0.0
396
Normal
0.0
873
Tumor
0.0
874
Normal
0.0
363
Tumor
0.0
461
Tumor
0.0
138
Normal
0.0
618
Normal
0.0
642
Normal
0.0
516
Normal
0.0
515
Tumor
0.0
916
Normal
0.0
662
Normal
0.0
284
Normal
0.0
426
Normal
0.0
526
Normal
0.0
362
Normal
0.0
924
Normal
-0.1
358
Normal
-0.1
386
Normal
-0.1
433
Tumor
-0.1
223
Tumor
-0.1
421
Tumor
-0.1
492
Normal
-0.1
411
Tumor
-0.1
1028
Normal
-0.1
978
Normal
-0.1
474
Normal
-0.1
343
Tumor
-0.1
558
Normal
-0.1
813
Tumor
-0.1
491
Tumor
-0.1
917
Tumor
-0.1
188
Normal
-0.1
361
Tumor
-0.1
1031
Tumor
-0.1
212
Normal
-0.1
663
Tumor
-0.1
195
Tumor
-0.1
383
Tumor
-0.2
816
Normal
-0.2
518
Normal
-0.2
187
Tumor
-0.2
982
Normal
-0.2
554
Normal
-0.2
232
Normal
-0.2
415
Tumor
-0.2
1021
Tumor
-0.2
647
Tumor
-0.2
883
Tumor
-0.2
467
Tumor
-0.2
434
Normal
-0.2
341
Tumor
-0.2
112
Tumor
-0.2
746
Normal
-0.2
447
Tumor
-0.2
545
Tumor
-0.3
557
Tumor
-0.3
536
Normal
-0.3
353
Tumor
-0.3
493
Tumor
-0.3
452
Normal
-0.3
563
Tumor
-0.3
743
Tumor
-0.3
1043
Tumor
-0.3
471
Tumor
-0.3
283
Tumor
-0.3
861
Tumor
-0.3
365
Tumor
-0.3
213
Tumor
-0.3
661
Tumor
-0.3
671
Tumor
-0.3
533
Tumor
-0.3
697
Tumor
-0.3
228
Normal
-0.3
881
Tumor
-0.3
852
Normal
-0.3
877
Tumor
-0.3
425
Tumor
-0.3
391
Tumor
-0.4
331
Tumor
-0.4
286
Normal
-0.4
125
Tumor
-0.4
135
Tumor
-0.4
123
Tumor
-0.4
221
Tumor
-0.4
218
Normal
-0.4
423
Tumor
-0.4
943
Tumor
-0.4
777
Tumor
-0.4
395
Tumor
-0.4
416
Normal
-0.4
524
Normal
-0.4
523
Tumor
-0.4
217
Tumor
-0.4
955
Tumor
-0.5
297
Tumor
-0.5
956
Normal
-0.5
966
Normal
-0.5
627
Tumor
-0.5
385
Tumor
-0.5
1027
Tumor
-0.6
527
Tumor
-0.6
573
Tumor
-0.6
615
Tumor
-0.6
375
Tumor
-0.6
537
Tumor
-0.6
525
Tumor
-0.6
975
Tumor
-0.6
915
Tumor
-0.6
823
Tumor
-0.6
817
Tumor
-0.6
445
Tumor
-0.7
921
Tumor
-0.7
1041
Tumor
-0.7
351
Tumor
-0.7
567
Tumor
-0.7
327
Tumor
-0.7
311
Tumor
-0.7
724
Normal
-0.7
517
Tumor
-0.7
977
Tumor
-0.7
641
Tumor
-0.7
951
Tumor
-0.7
963
Tumor
-0.7
487
Tumor
-0.8
171
Tumor
-0.8
617
Tumor
-0.8
271
Tumor
-0.8
313
Tumor
-0.8
227
Tumor
-0.8
231
Tumor
-0.8
483
Tumor
-0.8
131
Tumor
-0.8
721
Tumor
-0.9
727
Tumor
-0.9
953
Tumor
-0.9
477
Tumor
-0.9
257
Tumor
-0.9
741
Tumor
-0.9
211
Tumor
-0.9
455
Tumor
-1.0
911
Tumor
-1.0
685
Tumor
-1.1
553
Tumor
-1.2
867
Tumor
-1.2
1013
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
