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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAST2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAST2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
88.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
49.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
48.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
47.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
32.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.3
1013
Tumor
0.9
473
Tumor
0.9
497
Tumor
0.8
957
Tumor
0.8
221
Tumor
0.7
192
Normal
0.7
685
Tumor
0.6
271
Tumor
0.6
217
Tumor
0.6
285
Tumor
0.6
615
Tumor
0.6
617
Tumor
0.6
313
Tumor
0.6
724
Normal
0.6
491
Tumor
0.5
983
Tumor
0.5
332
Normal
0.5
977
Tumor
0.5
865
Tumor
0.5
277
Tumor
0.5
737
Tumor
0.5
851
Tumor
0.4
231
Tumor
0.4
213
Tumor
0.4
523
Tumor
0.4
487
Tumor
0.4
312
Normal
0.4
965
Tumor
0.4
777
Tumor
0.4
365
Tumor
0.4
513
Tumor
0.4
741
Tumor
0.3
278
Normal
0.3
661
Tumor
0.3
537
Tumor
0.3
447
Tumor
0.3
413
Tumor
0.3
211
Tumor
0.3
755
Tumor
0.3
147
Tumor
0.3
391
Tumor
0.3
917
Tumor
0.3
1021
Tumor
0.3
298
Normal
0.3
314
Normal
0.3
463
Tumor
0.3
387
Tumor
0.3
195
Tumor
0.3
358
Normal
0.3
123
Tumor
0.3
958
Normal
0.3
527
Tumor
0.3
884
Normal
0.3
431
Tumor
0.3
471
Tumor
0.3
861
Tumor
0.3
881
Tumor
0.3
191
Tumor
0.3
745
Tumor
0.2
863
Tumor
0.2
356
Normal
0.2
663
Tumor
0.2
744
Normal
0.2
647
Tumor
0.2
428
Normal
0.2
493
Tumor
0.2
743
Tumor
0.2
414
Normal
0.2
912
Normal
0.2
785
Tumor
0.2
435
Tumor
0.2
426
Normal
0.2
911
Tumor
0.2
695
Tumor
0.2
212
Normal
0.2
723
Tumor
0.2
567
Tumor
0.2
483
Tumor
0.2
877
Tumor
0.2
492
Normal
0.2
546
Normal
0.2
1027
Tumor
0.2
545
Tumor
0.2
494
Normal
0.2
218
Normal
0.2
746
Normal
0.2
616
Normal
0.2
422
Normal
0.2
738
Normal
0.2
968
Normal
0.2
852
Normal
0.2
464
Normal
0.2
955
Tumor
0.2
214
Normal
0.2
1032
Normal
0.2
742
Normal
0.2
161
Tumor
0.2
525
Tumor
0.2
456
Normal
0.2
445
Tumor
0.2
478
Normal
0.2
921
Tumor
0.2
573
Tumor
0.2
424
Normal
0.2
535
Tumor
0.2
528
Normal
0.1
944
Normal
0.1
648
Normal
0.1
923
Tumor
0.1
635
Tumor
0.1
976
Normal
0.1
824
Normal
0.1
536
Normal
0.1
423
Tumor
0.1
954
Normal
0.1
952
Normal
0.1
367
Tumor
0.1
883
Tumor
0.1
571
Tumor
0.1
484
Normal
0.1
432
Normal
0.1
925
Tumor
0.1
125
Tumor
0.1
331
Tumor
0.1
416
Normal
0.1
452
Normal
0.1
222
Normal
0.1
261
Tumor
0.1
938
Normal
0.1
284
Normal
0.1
227
Tumor
0.1
451
Tumor
0.1
224
Normal
0.1
641
Tumor
0.1
956
Normal
0.1
913
Tumor
0.1
916
Normal
0.1
816
Normal
0.1
383
Tumor
0.1
411
Tumor
0.1
756
Normal
0.1
728
Normal
0.1
882
Normal
0.1
978
Normal
0.1
311
Tumor
0.1
228
Normal
0.1
534
Normal
0.1
472
Normal
0.1
786
Normal
0.1
283
Tumor
0.1
461
Tumor
0.1
697
Tumor
0.1
721
Tumor
0.1
1041
Tumor
0.1
412
Normal
0.1
572
Normal
0.1
1022
Normal
0.1
352
Normal
0.1
328
Normal
0.0
1042
Normal
0.0
1044
Normal
0.0
714
Normal
0.0
353
Tumor
0.0
862
Normal
0.0
196
Normal
0.0
297
Tumor
0.0
171
Tumor
0.0
394
Normal
0.0
127
Tumor
0.0
514
Normal
0.0
498
Normal
0.0
868
Normal
0.0
1046
Normal
0.0
474
Normal
0.0
286
Normal
0.0
363
Tumor
0.0
554
Normal
0.0
866
Normal
0.0
223
Tumor
0.0
557
Tumor
0.0
716
Normal
0.0
385
Tumor
0.0
664
Normal
0.0
864
Normal
0.0
516
Normal
0.0
434
Normal
0.0
515
Tumor
0.0
778
Normal
0.0
966
Normal
0.0
1028
Normal
0.0
984
Normal
0.0
817
Tumor
0.0
341
Tumor
0.0
558
Normal
0.0
1014
Normal
0.0
186
Normal
0.0
443
Tumor
0.0
375
Tumor
0.0
564
Normal
0.0
433
Tumor
0.0
857
Tumor
0.0
696
Normal
0.0
466
Normal
0.0
553
Tumor
0.0
662
Normal
0.0
563
Tumor
0.0
362
Normal
0.0
355
Tumor
0.0
867
Tumor
0.0
392
Normal
0.0
481
Tumor
0.0
666
Normal
0.0
627
Tumor
0.0
488
Normal
0.0
427
Tumor
0.0
415
Tumor
0.0
574
Normal
0.0
628
Normal
0.0
918
Normal
0.0
436
Normal
0.0
361
Tumor
0.0
874
Normal
0.0
388
Normal
0.0
951
Tumor
0.0
396
Normal
0.0
538
Normal
0.0
446
Normal
0.0
943
Tumor
0.0
568
Normal
0.0
878
Normal
-0.1
172
Normal
-0.1
518
Normal
-0.1
975
Tumor
-0.1
257
Tumor
-0.1
112
Tumor
-0.1
1043
Tumor
-0.1
814
Normal
-0.1
815
Tumor
-0.1
963
Tumor
-0.1
113
Tumor
-0.1
384
Normal
-0.1
1045
Tumor
-0.1
526
Normal
-0.1
1015
Tumor
-0.1
386
Normal
-0.1
858
Normal
-0.1
713
Tumor
-0.1
114
Normal
-0.1
982
Normal
-0.1
937
Tumor
-0.1
727
Tumor
-0.1
366
Normal
-0.1
162
Normal
-0.1
524
Normal
-0.1
468
Normal
-0.1
267
Tumor
-0.1
137
Tumor
-0.1
141
Tumor
-0.1
477
Tumor
-0.1
444
Normal
-0.1
368
Normal
-0.1
124
Normal
-0.1
262
Normal
-0.1
448
Normal
-0.1
455
Tumor
-0.1
698
Normal
-0.1
873
Tumor
-0.1
342
Normal
-0.2
686
Normal
-0.2
533
Tumor
-0.2
915
Tumor
-0.2
425
Tumor
-0.2
465
Tumor
-0.2
187
Tumor
-0.2
823
Tumor
-0.2
327
Tumor
-0.2
926
Normal
-0.2
672
Normal
-0.2
128
Normal
-0.2
395
Tumor
-0.2
185
Tumor
-0.2
922
Normal
-0.2
364
Normal
-0.2
1016
Normal
-0.2
344
Normal
-0.2
126
Normal
-0.2
924
Normal
-0.2
1025
Tumor
-0.2
722
Normal
-0.2
818
Normal
-0.2
517
Tumor
-0.2
148
Normal
-0.2
111
Normal
-0.2
232
Normal
-0.2
1031
Tumor
-0.2
376
Normal
-0.2
462
Normal
-0.2
665
Tumor
-0.2
618
Normal
-0.2
421
Tumor
-0.2
914
Normal
-0.2
268
Normal
-0.2
981
Tumor
-0.3
188
Normal
-0.3
393
Tumor
-0.3
1026
Normal
-0.3
967
Tumor
-0.3
258
Normal
-0.3
354
Normal
-0.3
351
Tumor
-0.3
467
Tumor
-0.3
964
Normal
-0.3
482
Normal
-0.4
636
Normal
-0.4
142
Normal
-0.4
138
Normal
-0.4
953
Tumor
-0.4
813
Tumor
-0.4
146
Normal
-0.4
642
Normal
-0.4
145
Tumor
-0.4
715
Tumor
-0.5
132
Normal
-0.5
357
Tumor
-0.5
343
Tumor
-0.5
136
Normal
-0.5
671
Tumor
-0.8
135
Tumor
-1.0
272
Normal
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
