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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POMGNT1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
69.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
68.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
62.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
60.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
56.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
52.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
51.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
47.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
47.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
38.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
37.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
36.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
36.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
35.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
34.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
32.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
29.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
29.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
26.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
24.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POMGNT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.9
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
58.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
53.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
49.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
47.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
47.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
40.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
39.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
38.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
35.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
35.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
33.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
30.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
29.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
1.1
957
Tumor
1.0
257
Tumor
0.9
393
Tumor
0.8
527
Tumor
0.8
533
Tumor
0.8
191
Tumor
0.8
387
Tumor
0.8
427
Tumor
0.8
327
Tumor
0.8
491
Tumor
0.8
213
Tumor
0.7
145
Tumor
0.7
721
Tumor
0.7
741
Tumor
0.6
647
Tumor
0.6
353
Tumor
0.6
617
Tumor
0.6
261
Tumor
0.6
573
Tumor
0.5
571
Tumor
0.5
383
Tumor
0.5
863
Tumor
0.5
231
Tumor
0.5
937
Tumor
0.5
911
Tumor
0.5
425
Tumor
0.5
218
Normal
0.5
278
Normal
0.4
195
Tumor
0.4
192
Normal
0.4
332
Normal
0.4
925
Tumor
0.4
557
Tumor
0.4
865
Tumor
0.4
365
Tumor
0.4
1027
Tumor
0.4
755
Tumor
0.4
685
Tumor
0.4
217
Tumor
0.4
497
Tumor
0.4
391
Tumor
0.4
722
Normal
0.4
697
Tumor
0.4
411
Tumor
0.4
161
Tumor
0.4
368
Normal
0.4
431
Tumor
0.4
1021
Tumor
0.4
443
Tumor
0.4
341
Tumor
0.3
141
Tumor
0.3
283
Tumor
0.3
395
Tumor
0.3
873
Tumor
0.3
423
Tumor
0.3
361
Tumor
0.3
477
Tumor
0.3
267
Tumor
0.3
357
Tumor
0.3
214
Normal
0.3
123
Tumor
0.3
113
Tumor
0.3
467
Tumor
0.3
564
Normal
0.3
777
Tumor
0.3
615
Tumor
0.3
568
Normal
0.3
672
Normal
0.3
636
Normal
0.3
868
Normal
0.2
1022
Normal
0.2
635
Tumor
0.2
563
Tumor
0.2
545
Tumor
0.2
277
Tumor
0.2
428
Normal
0.2
618
Normal
0.2
913
Tumor
0.2
953
Tumor
0.2
358
Normal
0.2
627
Tumor
0.2
745
Tumor
0.2
686
Normal
0.2
413
Tumor
0.2
314
Normal
0.2
127
Tumor
0.2
187
Tumor
0.2
228
Normal
0.2
451
Tumor
0.2
616
Normal
0.2
188
Normal
0.2
558
Normal
0.2
185
Tumor
0.2
132
Normal
0.2
474
Normal
0.2
663
Tumor
0.2
448
Normal
0.2
138
Normal
0.2
298
Normal
0.2
883
Tumor
0.2
344
Normal
0.2
462
Normal
0.2
343
Tumor
0.2
196
Normal
0.2
286
Normal
0.2
222
Normal
0.2
297
Tumor
0.2
662
Normal
0.2
125
Tumor
0.2
526
Normal
0.2
136
Normal
0.2
172
Normal
0.2
923
Tumor
0.2
515
Tumor
0.2
664
Normal
0.2
965
Tumor
0.2
955
Tumor
0.2
642
Normal
0.2
696
Normal
0.2
162
Normal
0.2
567
Tumor
0.2
142
Normal
0.2
713
Tumor
0.2
146
Normal
0.2
148
Normal
0.2
648
Normal
0.2
641
Tumor
0.2
186
Normal
0.1
968
Normal
0.1
384
Normal
0.1
354
Normal
0.1
464
Normal
0.1
468
Normal
0.1
524
Normal
0.1
432
Normal
0.1
743
Tumor
0.1
1044
Normal
0.1
857
Tumor
0.1
112
Tumor
0.1
436
Normal
0.1
572
Normal
0.1
355
Tumor
0.1
445
Tumor
0.1
514
Normal
0.1
813
Tumor
0.1
574
Normal
0.1
695
Tumor
0.1
424
Normal
0.1
785
Tumor
0.1
311
Tumor
0.1
976
Normal
0.1
714
Normal
0.1
535
Tumor
0.1
312
Normal
0.1
493
Tumor
0.1
958
Normal
0.1
1028
Normal
0.1
426
Normal
0.1
981
Tumor
0.1
862
Normal
0.1
964
Normal
0.1
224
Normal
0.1
628
Normal
0.1
1042
Normal
0.1
665
Tumor
0.1
414
Normal
0.1
1026
Normal
0.1
452
Normal
0.1
1014
Normal
0.1
1015
Tumor
0.1
212
Normal
0.1
461
Tumor
0.1
421
Tumor
0.1
661
Tumor
0.1
135
Tumor
0.1
523
Tumor
0.1
525
Tumor
0.1
814
Normal
0.1
977
Tumor
0.1
874
Normal
0.1
518
Normal
0.1
867
Tumor
0.1
456
Normal
0.1
851
Tumor
0.0
471
Tumor
0.0
268
Normal
0.0
494
Normal
0.0
858
Normal
0.0
756
Normal
0.0
852
Normal
0.0
352
Normal
0.0
466
Normal
0.0
864
Normal
0.0
666
Normal
0.0
914
Normal
0.0
728
Normal
0.0
232
Normal
0.0
918
Normal
0.0
433
Tumor
0.0
516
Normal
0.0
376
Normal
0.0
951
Tumor
0.0
528
Normal
0.0
866
Normal
0.0
481
Tumor
0.0
746
Normal
0.0
537
Tumor
0.0
473
Tumor
0.0
137
Tumor
0.0
394
Normal
0.0
171
Tumor
0.0
262
Normal
0.0
488
Normal
0.0
861
Tumor
0.0
385
Tumor
0.0
396
Normal
0.0
912
Normal
0.0
716
Normal
0.0
147
Tumor
0.0
342
Normal
0.0
444
Normal
0.0
536
Normal
0.0
478
Normal
0.0
1046
Normal
0.0
284
Normal
0.0
366
Normal
0.0
483
Tumor
0.0
221
Tumor
0.0
392
Normal
0.0
434
Normal
0.0
926
Normal
0.0
1032
Normal
0.0
223
Tumor
0.0
1013
Tumor
0.0
388
Normal
0.0
513
Tumor
0.0
111
Normal
0.0
922
Normal
0.0
375
Tumor
0.0
1041
Tumor
0.0
824
Normal
0.0
484
Normal
0.0
386
Normal
0.0
331
Tumor
-0.1
956
Normal
-0.1
534
Normal
-0.1
128
Normal
-0.1
422
Normal
-0.1
554
Normal
-0.1
975
Tumor
-0.1
435
Tumor
-0.1
884
Normal
-0.1
367
Tumor
-0.1
546
Normal
-0.1
823
Tumor
-0.1
786
Normal
-0.1
351
Tumor
-0.1
356
Normal
-0.1
816
Normal
-0.1
966
Normal
-0.1
114
Normal
-0.1
446
Normal
-0.1
472
Normal
-0.1
124
Normal
-0.1
1045
Tumor
-0.1
1016
Normal
-0.1
482
Normal
-0.1
313
Tumor
-0.1
738
Normal
-0.1
944
Normal
-0.1
517
Tumor
-0.1
415
Tumor
-0.1
984
Normal
-0.1
211
Tumor
-0.1
498
Normal
-0.1
465
Tumor
-0.1
952
Normal
-0.1
778
Normal
-0.1
227
Tumor
-0.1
978
Normal
-0.1
915
Tumor
-0.1
916
Normal
-0.1
538
Normal
-0.2
447
Tumor
-0.2
878
Normal
-0.2
943
Tumor
-0.2
882
Normal
-0.2
126
Normal
-0.2
917
Tumor
-0.2
272
Normal
-0.2
723
Tumor
-0.2
724
Normal
-0.2
463
Tumor
-0.2
881
Tumor
-0.2
982
Normal
-0.2
727
Tumor
-0.2
877
Tumor
-0.2
921
Tumor
-0.2
954
Normal
-0.2
963
Tumor
-0.2
258
Normal
-0.2
492
Normal
-0.2
553
Tumor
-0.2
698
Normal
-0.2
271
Tumor
-0.2
924
Normal
-0.2
364
Normal
-0.2
737
Tumor
-0.3
412
Normal
-0.3
818
Normal
-0.3
938
Normal
-0.3
362
Normal
-0.3
455
Tumor
-0.3
744
Normal
-0.3
715
Tumor
-0.3
983
Tumor
-0.3
1043
Tumor
-0.3
817
Tumor
-0.3
1025
Tumor
-0.4
328
Normal
-0.4
742
Normal
-0.4
416
Normal
-0.4
967
Tumor
-0.4
815
Tumor
-0.4
671
Tumor
-0.4
285
Tumor
-0.4
131
Tumor
-0.5
1031
Tumor
-0.5
363
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
