MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.4 nTPM
HPA Brain:18.4 nTPM
GTEx:5.4 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:4.9 nTPM
Mouse:9.5 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 18.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.8
2666 Male, age 74, left hemisphere 24.9
2019 Male, age 18, unknown 18.1
1827 Male, age 72, unknown 16.1
2411 Female, age 72, unknown 15.5
2219 Male, age 76, both hemispheres 14.3
1830 Male, age 51, unknown 13.1
1833 Male, age 53, unknown 12.9
2586 Male, age 75, left hemisphere 12.6
2828 Female, age 72, unknown 11.0
1870 Female, age 42, unknown 9.5
Dorsal raphe nucleus
nTPM: 18.3
2298 Female, age 72, unknown 23.3
1828 Male, age 53, unknown 20.2
2750 Male, age 76, both hemispheres 18.9
2047 Male, age 72, unknown 17.8
2016 Female, age 72, unknown 11.3
Inferior colliculus
nTPM: 14.4
2097 Female, age 72, unknown 17.5
1890 Male, age 53, unknown 14.2
2849 Male, age 72, unknown 13.1
1848 Female, age 42, unknown 12.8
Median raphe nucleus
nTPM: 18.4
2220 Male, age 76, midline 18.4
Periaquaductal grey, anterior
nTPM: 14.8
1795 Male, age 51, unknown 16.6
1947 Male, age 18, unknown 14.1
2502 Female, age 75, unknown 13.9
Periaquaductal grey, dorsal
nTPM: 13.0
1831 Male, age 72, unknown 14.6
2464 Female, age 72, unknown 13.6
1840 Male, age 53, unknown 13.1
2850 Male, age 76, both hemispheres 10.8
Periaquaductal grey, lateral
nTPM: 10.7
2053 Male, age 18, unknown 11.2
2140 Male, age 76, both hemispheres 11.1
2272 Male, age 74, both hemispheres 9.9
Pretectal area
nTPM: 18.2
1816 Male, age 51, unknown 28.3
1944 Female, age 72, unknown 26.4
2007 Male, age 72, unknown 25.6
1817 Female, age 42, unknown 25.0
1815 Male, age 53, unknown 20.6
2667 Female, age 75, unknown 15.4
2224 Female, age 72, unknown 14.3
2407 Male, age 75, both hemispheres 12.8
2316 Male, age 76, right hemisphere 11.4
2825 Male, age 18, unknown 11.4
2273 Male, age 74, both hemispheres 8.8
Red nucleus
nTPM: 8.4
2785 Male, age 18, unknown 14.9
2584 Male, age 75, left hemisphere 11.4
1821 Female, age 72, unknown 9.6
2588 Male, age 74, left hemisphere 8.7
2823 Male, age 76, right hemisphere 8.0
2769 Male, age 72, unknown 7.8
1954 Female, age 42, unknown 7.6
1904 Male, age 53, unknown 7.0
2725 Female, age 75, unknown 7.0
2227 Male, age 72, unknown 6.8
1865 Male, age 51, unknown 5.9
2503 Female, age 72, unknown 5.8
Substantia nigra
nTPM: 16.7
2409 Female, age 72, unknown 23.2
1916 Female, age 42, unknown 22.5
1889 Female, age 72, unknown 20.5
2241 Male, age 72, unknown 18.6
2665 Male, age 74, both hemispheres 18.1
1851 Male, age 51, unknown 17.4
2583 Male, age 75, right hemisphere 14.3
1941 Male, age 53, unknown 13.8
2699 Male, age 18, unknown 9.5
2590 Female, age 75, unknown 8.8
Superior colliculus
nTPM: 16.1
2668 Female, age 75, unknown 35.3
2087 Female, age 72, unknown 22.0
2664 Male, age 75, both hemispheres 16.4
2261 Male, age 18, unknown 16.2
1895 Male, age 76, right hemisphere 15.6
1796 Male, age 53, unknown 14.6
1839 Male, age 51, unknown 11.5
2587 Male, age 74, left hemisphere 11.0
1913 Female, age 42, unknown 9.8
1995 Male, age 72, unknown 8.8
Ventral tegmental area
nTPM: 13.5
2218 Male, age 76, both hemispheres 17.1
2410 Female, age 72, unknown 15.9
1915 Female, age 42, unknown 14.4
2021 Male, age 53, unknown 14.0
1942 Male, age 51, unknown 11.9
2223 Female, age 72, unknown 7.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.4
Samples: 139

Max nTPM: 20.1
Min nTPM: 0.0
Std nTPM: 4.5
Median nTPM: 4.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 20.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 19.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 18.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 15.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 15.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 14.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 12.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 12.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 12.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 4.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.5
Samples: 4

Max nTPM: 4.7
Min nTPM: 1.6
Sample A Female 4.7
Sample B Female 3.0
Sample C Male 4.5
Sample D Male 1.6
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 6.1
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 3.2
Sample C Male 6.1
Sample D Male 4.7
Periaqueductal gray
nTPM: 3.5
Samples: 3

Max nTPM: 4.4
Min nTPM: 2.9
Sample B Female 2.9
Sample C Male 4.4
Sample D Male 3.1
Superior colliculi
nTPM: 4.9
Samples: 4

Max nTPM: 7.6
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 4.7
Sample C Male 7.6
Sample D Male 4.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.6
Sample A Male 8.6
Sample B Male 8.9
Sample C Female 11.6
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
75828175 Antisense, RP_060601_01_E11, Mouse strain C57BL/6J (56 days, male) 2.8

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