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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTIF2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
47.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTIF2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.1
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
56.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
41.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
41.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
37.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
36.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
33.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
33.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
32.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.2
473
Tumor
1.2
231
Tumor
1.0
967
Tumor
1.0
171
Tumor
1.0
227
Tumor
0.9
435
Tumor
0.8
477
Tumor
0.8
685
Tumor
0.8
665
Tumor
0.7
571
Tumor
0.7
745
Tumor
0.7
615
Tumor
0.7
513
Tumor
0.6
741
Tumor
0.6
867
Tumor
0.6
713
Tumor
0.6
557
Tumor
0.6
367
Tumor
0.6
627
Tumor
0.6
567
Tumor
0.6
915
Tumor
0.6
365
Tumor
0.6
823
Tumor
0.5
755
Tumor
0.5
1013
Tumor
0.5
981
Tumor
0.5
267
Tumor
0.5
925
Tumor
0.5
361
Tumor
0.5
861
Tumor
0.5
363
Tumor
0.5
883
Tumor
0.5
1025
Tumor
0.4
423
Tumor
0.4
537
Tumor
0.4
951
Tumor
0.4
697
Tumor
0.4
123
Tumor
0.4
635
Tumor
0.4
127
Tumor
0.4
911
Tumor
0.4
145
Tumor
0.4
257
Tumor
0.4
724
Normal
0.4
411
Tumor
0.4
351
Tumor
0.4
715
Tumor
0.4
873
Tumor
0.4
393
Tumor
0.3
465
Tumor
0.3
977
Tumor
0.3
553
Tumor
0.3
695
Tumor
0.3
357
Tumor
0.3
1031
Tumor
0.3
877
Tumor
0.3
785
Tumor
0.3
491
Tumor
0.3
857
Tumor
0.3
1021
Tumor
0.2
451
Tumor
0.2
564
Normal
0.2
616
Normal
0.2
387
Tumor
0.2
965
Tumor
0.2
865
Tumor
0.2
953
Tumor
0.2
743
Tumor
0.2
913
Tumor
0.2
471
Tumor
0.2
1015
Tumor
0.1
313
Tumor
0.1
483
Tumor
0.1
858
Normal
0.1
132
Normal
0.1
533
Tumor
0.1
353
Tumor
0.1
331
Tumor
0.1
912
Normal
0.1
436
Normal
0.1
1014
Normal
0.1
696
Normal
0.1
742
Normal
0.1
777
Tumor
0.1
721
Tumor
0.1
868
Normal
0.1
926
Normal
0.1
474
Normal
0.1
671
Tumor
0.1
366
Normal
0.1
327
Tumor
0.1
964
Normal
0.1
298
Normal
0.1
272
Normal
0.1
195
Tumor
0.1
824
Normal
0.1
937
Tumor
0.1
191
Tumor
0.1
514
Normal
0.1
818
Normal
0.1
356
Normal
0.1
983
Tumor
0.1
756
Normal
0.1
391
Tumor
0.1
664
Normal
0.1
648
Normal
0.1
944
Normal
0.1
722
Normal
0.1
261
Tumor
0.1
815
Tumor
0.1
427
Tumor
0.1
136
Normal
0.1
383
Tumor
0.1
914
Normal
0.1
472
Normal
0.1
663
Tumor
0.0
786
Normal
0.0
723
Tumor
0.0
112
Tumor
0.0
462
Normal
0.0
433
Tumor
0.0
963
Tumor
0.0
467
Tumor
0.0
223
Tumor
0.0
878
Normal
0.0
135
Tumor
0.0
527
Tumor
0.0
641
Tumor
0.0
778
Normal
0.0
738
Normal
0.0
746
Normal
0.0
958
Normal
0.0
618
Normal
0.0
114
Normal
0.0
526
Normal
0.0
284
Normal
0.0
686
Normal
0.0
368
Normal
0.0
727
Tumor
0.0
258
Normal
0.0
314
Normal
0.0
328
Normal
0.0
572
Normal
0.0
662
Normal
0.0
1045
Tumor
0.0
642
Normal
0.0
628
Normal
0.0
952
Normal
0.0
466
Normal
0.0
568
Normal
0.0
1046
Normal
0.0
271
Tumor
0.0
452
Normal
0.0
716
Normal
0.0
312
Normal
0.0
573
Tumor
0.0
278
Normal
0.0
376
Normal
0.0
228
Normal
0.0
385
Tumor
0.0
982
Normal
0.0
431
Tumor
0.0
884
Normal
0.0
428
Normal
0.0
464
Normal
0.0
188
Normal
0.0
416
Normal
0.0
984
Normal
-0.1
525
Tumor
-0.1
978
Normal
-0.1
213
Tumor
-0.1
954
Normal
-0.1
523
Tumor
-0.1
221
Tumor
-0.1
862
Normal
-0.1
1043
Tumor
-0.1
147
Tumor
-0.1
976
Normal
-0.1
1026
Normal
-0.1
482
Normal
-0.1
636
Normal
-0.1
666
Normal
-0.1
864
Normal
-0.1
148
Normal
-0.1
816
Normal
-0.1
128
Normal
-0.1
714
Normal
-0.1
172
Normal
-0.1
342
Normal
-0.1
196
Normal
-0.1
882
Normal
-0.1
141
Tumor
-0.1
534
Normal
-0.1
516
Normal
-0.1
517
Tumor
-0.1
222
Normal
-0.1
187
Tumor
-0.1
362
Normal
-0.1
297
Tumor
-0.1
515
Tumor
-0.1
232
Normal
-0.1
535
Tumor
-0.1
212
Normal
-0.1
672
Normal
-0.1
161
Tumor
-0.1
956
Normal
-0.1
497
Tumor
-0.1
355
Tumor
-0.1
728
Normal
-0.1
1032
Normal
-0.1
918
Normal
-0.1
484
Normal
-0.1
358
Normal
-0.1
546
Normal
-0.1
881
Tumor
-0.1
1022
Normal
-0.1
448
Normal
-0.1
384
Normal
-0.1
487
Tumor
-0.1
866
Normal
-0.1
214
Normal
-0.1
126
Normal
-0.1
1016
Normal
-0.1
388
Normal
-0.1
938
Normal
-0.1
574
Normal
-0.1
617
Tumor
-0.1
113
Tumor
-0.1
426
Normal
-0.1
146
Normal
-0.1
185
Tumor
-0.1
142
Normal
-0.1
955
Tumor
-0.2
375
Tumor
-0.2
137
Tumor
-0.2
224
Normal
-0.2
414
Normal
-0.2
922
Normal
-0.2
528
Normal
-0.2
461
Tumor
-0.2
813
Tumor
-0.2
138
Normal
-0.2
396
Normal
-0.2
558
Normal
-0.2
422
Normal
-0.2
468
Normal
-0.2
268
Normal
-0.2
968
Normal
-0.2
364
Normal
-0.2
493
Tumor
-0.2
456
Normal
-0.2
518
Normal
-0.2
852
Normal
-0.2
412
Normal
-0.2
698
Normal
-0.2
445
Tumor
-0.2
354
Normal
-0.2
478
Normal
-0.2
916
Normal
-0.2
923
Tumor
-0.2
415
Tumor
-0.2
432
Normal
-0.2
352
Normal
-0.2
661
Tumor
-0.2
395
Tumor
-0.2
341
Tumor
-0.2
1042
Normal
-0.2
874
Normal
-0.2
481
Tumor
-0.2
447
Tumor
-0.2
392
Normal
-0.2
443
Tumor
-0.3
1028
Normal
-0.3
131
Tumor
-0.3
446
Normal
-0.3
262
Normal
-0.3
162
Normal
-0.3
413
Tumor
-0.3
285
Tumor
-0.3
111
Normal
-0.3
332
Normal
-0.3
554
Normal
-0.3
538
Normal
-0.3
434
Normal
-0.3
386
Normal
-0.3
966
Normal
-0.3
186
Normal
-0.3
211
Tumor
-0.3
424
Normal
-0.3
814
Normal
-0.3
957
Tumor
-0.3
344
Normal
-0.3
1044
Normal
-0.3
444
Normal
-0.3
124
Normal
-0.3
924
Normal
-0.3
394
Normal
-0.3
975
Tumor
-0.3
488
Normal
-0.3
744
Normal
-0.3
647
Tumor
-0.3
563
Tumor
-0.3
286
Normal
-0.3
943
Tumor
-0.4
524
Normal
-0.4
1027
Tumor
-0.4
494
Normal
-0.4
817
Tumor
-0.4
917
Tumor
-0.4
311
Tumor
-0.4
421
Tumor
-0.4
463
Tumor
-0.5
737
Tumor
-0.5
277
Tumor
-0.5
851
Tumor
-0.5
192
Normal
-0.5
125
Tumor
-0.5
536
Normal
-0.5
218
Normal
-0.5
498
Normal
-0.5
492
Normal
-0.5
217
Tumor
-0.5
455
Tumor
-0.6
283
Tumor
-0.6
425
Tumor
-0.7
863
Tumor
-0.8
545
Tumor
-0.8
343
Tumor
-1.0
921
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
