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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CAD is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
80.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
77.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
69.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
63.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
50.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
50.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
48.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
47.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
46.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
46.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
45.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
45.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
36.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CAD is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.1
685
Tumor
0.9
523
Tumor
0.8
393
Tumor
0.8
125
Tumor
0.8
815
Tumor
0.8
357
Tumor
0.8
413
Tumor
0.7
131
Tumor
0.6
517
Tumor
0.6
661
Tumor
0.6
665
Tumor
0.6
367
Tumor
0.6
425
Tumor
0.5
813
Tumor
0.5
567
Tumor
0.5
727
Tumor
0.5
537
Tumor
0.5
965
Tumor
0.5
715
Tumor
0.5
283
Tumor
0.5
451
Tumor
0.5
445
Tumor
0.4
695
Tumor
0.4
112
Tumor
0.4
615
Tumor
0.4
663
Tumor
0.3
423
Tumor
0.3
724
Normal
0.3
343
Tumor
0.3
127
Tumor
0.3
877
Tumor
0.3
943
Tumor
0.3
465
Tumor
0.3
147
Tumor
0.3
814
Normal
0.3
571
Tumor
0.3
923
Tumor
0.3
387
Tumor
0.2
951
Tumor
0.2
981
Tumor
0.2
743
Tumor
0.2
1043
Tumor
0.2
1013
Tumor
0.2
915
Tumor
0.2
447
Tumor
0.2
391
Tumor
0.2
671
Tumor
0.2
697
Tumor
0.2
983
Tumor
0.2
187
Tumor
0.2
953
Tumor
0.2
515
Tumor
0.2
435
Tumor
0.2
313
Tumor
0.2
123
Tumor
0.2
867
Tumor
0.2
525
Tumor
0.1
171
Tumor
0.1
963
Tumor
0.1
342
Normal
0.1
1021
Tumor
0.1
227
Tumor
0.1
527
Tumor
0.1
431
Tumor
0.1
557
Tumor
0.1
421
Tumor
0.1
332
Normal
0.1
385
Tumor
0.1
535
Tumor
0.1
737
Tumor
0.1
285
Tumor
0.1
745
Tumor
0.1
331
Tumor
0.1
666
Normal
0.1
911
Tumor
0.1
627
Tumor
0.1
352
Normal
0.1
873
Tumor
0.1
223
Tumor
0.0
137
Tumor
0.0
298
Normal
0.0
361
Tumor
0.0
573
Tumor
0.0
672
Normal
0.0
354
Normal
0.0
443
Tumor
0.0
744
Normal
0.0
186
Normal
0.0
231
Tumor
0.0
977
Tumor
0.0
327
Tumor
0.0
461
Tumor
0.0
487
Tumor
0.0
358
Normal
0.0
883
Tumor
0.0
722
Normal
0.0
1031
Tumor
0.0
314
Normal
0.0
426
Normal
0.0
467
Tumor
0.0
341
Tumor
0.0
568
Normal
0.0
636
Normal
0.0
414
Normal
0.0
664
Normal
0.0
917
Tumor
0.0
278
Normal
0.0
738
Normal
0.0
411
Tumor
0.0
191
Tumor
0.0
297
Tumor
0.0
742
Normal
0.0
424
Normal
0.0
428
Normal
0.0
574
Normal
0.0
355
Tumor
0.0
975
Tumor
0.0
433
Tumor
0.0
698
Normal
0.0
564
Normal
0.0
261
Tumor
-0.1
213
Tumor
-0.1
1044
Normal
-0.1
463
Tumor
-0.1
222
Normal
-0.1
211
Tumor
-0.1
616
Normal
-0.1
196
Normal
-0.1
388
Normal
-0.1
384
Normal
-0.1
818
Normal
-0.1
311
Tumor
-0.1
232
Normal
-0.1
366
Normal
-0.1
857
Tumor
-0.1
1046
Normal
-0.1
642
Normal
-0.1
1032
Normal
-0.1
195
Tumor
-0.1
483
Tumor
-0.1
756
Normal
-0.1
394
Normal
-0.1
146
Normal
-0.1
422
Normal
-0.1
113
Tumor
-0.1
312
Normal
-0.1
572
Normal
-0.1
662
Normal
-0.1
383
Tumor
-0.1
392
Normal
-0.1
648
Normal
-0.1
228
Normal
-0.1
124
Normal
-0.1
488
Normal
-0.1
344
Normal
-0.1
723
Tumor
-0.1
785
Tumor
-0.1
286
Normal
-0.1
863
Tumor
-0.1
271
Tumor
-0.1
456
Normal
-0.1
185
Tumor
-0.1
353
Tumor
-0.1
217
Tumor
-0.1
741
Tumor
-0.1
473
Tumor
-0.1
1014
Normal
-0.1
386
Normal
-0.1
221
Tumor
-0.1
497
Tumor
-0.1
1026
Normal
-0.1
436
Normal
-0.1
356
Normal
-0.1
128
Normal
-0.1
714
Normal
-0.1
1025
Tumor
-0.1
493
Tumor
-0.1
272
Normal
-0.1
976
Normal
-0.1
364
Normal
-0.1
964
Normal
-0.1
545
Tumor
-0.1
135
Tumor
-0.1
524
Normal
-0.1
696
Normal
-0.1
257
Tumor
-0.1
224
Normal
-0.1
132
Normal
-0.1
148
Normal
-0.1
427
Tumor
-0.1
1045
Tumor
-0.1
162
Normal
-0.1
376
Normal
-0.1
478
Normal
-0.1
1042
Normal
-0.1
375
Tumor
-0.1
713
Tumor
-0.1
188
Normal
-0.1
284
Normal
-0.2
881
Tumor
-0.2
984
Normal
-0.2
214
Normal
-0.2
444
Normal
-0.2
912
Normal
-0.2
114
Normal
-0.2
258
Normal
-0.2
1027
Tumor
-0.2
982
Normal
-0.2
448
Normal
-0.2
111
Normal
-0.2
746
Normal
-0.2
957
Tumor
-0.2
862
Normal
-0.2
1022
Normal
-0.2
526
Normal
-0.2
481
Tumor
-0.2
978
Normal
-0.2
365
Tumor
-0.2
138
Normal
-0.2
618
Normal
-0.2
446
Normal
-0.2
716
Normal
-0.2
432
Normal
-0.2
468
Normal
-0.2
924
Normal
-0.2
824
Normal
-0.2
363
Tumor
-0.2
516
Normal
-0.2
778
Normal
-0.2
192
Normal
-0.2
455
Tumor
-0.2
262
Normal
-0.2
452
Normal
-0.2
218
Normal
-0.2
412
Normal
-0.2
966
Normal
-0.2
1016
Normal
-0.2
482
Normal
-0.2
472
Normal
-0.2
126
Normal
-0.2
396
Normal
-0.2
212
Normal
-0.2
882
Normal
-0.2
498
Normal
-0.2
514
Normal
-0.2
161
Tumor
-0.2
777
Tumor
-0.2
686
Normal
-0.2
434
Normal
-0.2
558
Normal
-0.2
958
Normal
-0.2
922
Normal
-0.2
858
Normal
-0.2
536
Normal
-0.2
464
Normal
-0.2
786
Normal
-0.2
172
Normal
-0.2
491
Tumor
-0.2
874
Normal
-0.2
142
Normal
-0.2
628
Normal
-0.2
368
Normal
-0.2
362
Normal
-0.2
416
Normal
-0.2
328
Normal
-0.2
728
Normal
-0.2
755
Tumor
-0.2
866
Normal
-0.3
268
Normal
-0.3
534
Normal
-0.3
136
Normal
-0.3
1028
Normal
-0.3
484
Normal
-0.3
145
Tumor
-0.3
851
Tumor
-0.3
914
Normal
-0.3
816
Normal
-0.3
865
Tumor
-0.3
466
Normal
-0.3
554
Normal
-0.3
563
Tumor
-0.3
267
Tumor
-0.3
968
Normal
-0.3
494
Normal
-0.3
926
Normal
-0.3
952
Normal
-0.3
944
Normal
-0.3
546
Normal
-0.3
528
Normal
-0.3
518
Normal
-0.3
415
Tumor
-0.3
852
Normal
-0.3
864
Normal
-0.3
538
Normal
-0.3
925
Tumor
-0.3
884
Normal
-0.3
956
Normal
-0.3
938
Normal
-0.3
878
Normal
-0.3
635
Tumor
-0.3
462
Normal
-0.3
395
Tumor
-0.3
513
Tumor
-0.3
277
Tumor
-0.3
921
Tumor
-0.3
1041
Tumor
-0.3
474
Normal
-0.3
868
Normal
-0.3
916
Normal
-0.3
721
Tumor
-0.4
492
Normal
-0.4
553
Tumor
-0.4
141
Tumor
-0.4
533
Tumor
-0.4
471
Tumor
-0.4
477
Tumor
-0.4
823
Tumor
-0.4
954
Normal
-0.4
955
Tumor
-0.5
861
Tumor
-0.5
647
Tumor
-0.5
918
Normal
-0.6
641
Tumor
-0.7
913
Tumor
-0.8
937
Tumor
-0.9
817
Tumor
-0.9
967
Tumor
-1.0
1015
Tumor
-1.2
617
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
