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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB10 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
157.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
157.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
121.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
120.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
110.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
102.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
95.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
87.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
85.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
84.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
80.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
77.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
73.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
67.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
67.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
64.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
63.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
63.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
59.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
58.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
57.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
57.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
55.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
55.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
55.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
54.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
53.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
53.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
51.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
49.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
47.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
46.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
45.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
45.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
45.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
44.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
43.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
43.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
42.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
42.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
41.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
40.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
39.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
38.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
35.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
34.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
34.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
32.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
29.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
27.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB10 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.3
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
187.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
132.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
103.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
102.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
96.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
88.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
86.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
84.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
78.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
74.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
70.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
67.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
67.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
62.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
58.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
52.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
52.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
51.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
49.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
49.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
48.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
48.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
47.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
46.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
45.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
44.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
44.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
44.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
43.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
42.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
42.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
42.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
42.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
41.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
40.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
40.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
39.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
38.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
38.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
37.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
37.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
37.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
37.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
36.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
36.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
36.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
36.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
35.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
35.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
33.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
33.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
33.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.9
125
Tumor
0.9
573
Tumor
0.8
567
Tumor
0.8
697
Tumor
0.8
537
Tumor
0.7
527
Tumor
0.7
227
Tumor
0.7
525
Tumor
0.7
745
Tumor
0.7
953
Tumor
0.7
427
Tumor
0.7
713
Tumor
0.5
685
Tumor
0.5
393
Tumor
0.5
257
Tumor
0.5
313
Tumor
0.4
724
Normal
0.4
813
Tumor
0.4
815
Tumor
0.4
493
Tumor
0.4
491
Tumor
0.4
211
Tumor
0.4
533
Tumor
0.3
1025
Tumor
0.3
917
Tumor
0.3
571
Tumor
0.3
1013
Tumor
0.3
435
Tumor
0.3
661
Tumor
0.3
471
Tumor
0.3
283
Tumor
0.3
517
Tumor
0.3
147
Tumor
0.3
851
Tumor
0.3
983
Tumor
0.3
823
Tumor
0.3
957
Tumor
0.3
311
Tumor
0.2
867
Tumor
0.2
523
Tumor
0.2
857
Tumor
0.2
557
Tumor
0.2
445
Tumor
0.2
357
Tumor
0.2
1021
Tumor
0.2
943
Tumor
0.2
343
Tumor
0.2
627
Tumor
0.2
641
Tumor
0.2
1031
Tumor
0.2
921
Tumor
0.1
513
Tumor
0.1
967
Tumor
0.1
351
Tumor
0.1
553
Tumor
0.1
483
Tumor
0.1
1015
Tumor
0.1
375
Tumor
0.1
135
Tumor
0.1
877
Tumor
0.1
425
Tumor
0.1
978
Normal
0.1
363
Tumor
0.1
447
Tumor
0.1
131
Tumor
0.1
536
Normal
0.1
535
Tumor
0.1
617
Tumor
0.1
861
Tumor
0.1
873
Tumor
0.1
1043
Tumor
0.1
951
Tumor
0.1
944
Normal
0.1
923
Tumor
0.1
755
Tumor
0.1
952
Normal
0.1
1014
Normal
0.1
635
Tumor
0.1
431
Tumor
0.1
487
Tumor
0.1
524
Normal
0.1
817
Tumor
0.1
665
Tumor
0.1
966
Normal
0.1
478
Normal
0.1
415
Tumor
0.1
915
Tumor
0.0
778
Normal
0.0
545
Tumor
0.0
721
Tumor
0.0
451
Tumor
0.0
391
Tumor
0.0
925
Tumor
0.0
1028
Normal
0.0
954
Normal
0.0
964
Normal
0.0
785
Tumor
0.0
285
Tumor
0.0
881
Tumor
0.0
1044
Normal
0.0
191
Tumor
0.0
938
Normal
0.0
528
Normal
0.0
413
Tumor
0.0
271
Tumor
0.0
975
Tumor
0.0
824
Normal
0.0
1026
Normal
0.0
367
Tumor
0.0
327
Tumor
0.0
984
Normal
0.0
963
Tumor
0.0
695
Tumor
0.0
492
Normal
0.0
615
Tumor
0.0
852
Normal
0.0
981
Tumor
0.0
127
Tumor
0.0
385
Tumor
0.0
421
Tumor
0.0
455
Tumor
0.0
916
Normal
0.0
481
Tumor
0.0
715
Tumor
0.0
1032
Normal
0.0
213
Tumor
0.0
914
Normal
0.0
434
Normal
0.0
727
Tumor
0.0
518
Normal
0.0
911
Tumor
0.0
977
Tumor
0.0
968
Normal
0.0
221
Tumor
0.0
538
Normal
0.0
956
Normal
0.0
1045
Tumor
0.0
1022
Normal
0.0
223
Tumor
0.0
331
Tumor
0.0
883
Tumor
0.0
1041
Tumor
0.0
224
Normal
0.0
922
Normal
0.0
741
Tumor
0.0
814
Normal
0.0
484
Normal
0.0
558
Normal
0.0
534
Normal
0.0
217
Tumor
0.0
868
Normal
-0.1
884
Normal
-0.1
488
Normal
-0.1
616
Normal
-0.1
696
Normal
-0.1
728
Normal
-0.1
686
Normal
-0.1
212
Normal
-0.1
498
Normal
-0.1
816
Normal
-0.1
142
Normal
-0.1
113
Tumor
-0.1
866
Normal
-0.1
982
Normal
-0.1
361
Tumor
-0.1
218
Normal
-0.1
777
Tumor
-0.1
494
Normal
-0.1
383
Tumor
-0.1
546
Normal
-0.1
395
Tumor
-0.1
926
Normal
-0.1
443
Tumor
-0.1
448
Normal
-0.1
663
Tumor
-0.1
912
Normal
-0.1
882
Normal
-0.1
863
Tumor
-0.1
423
Tumor
-0.1
261
Tumor
-0.1
284
Normal
-0.1
472
Normal
-0.1
864
Normal
-0.1
554
Normal
-0.1
1046
Normal
-0.1
412
Normal
-0.1
723
Tumor
-0.1
955
Tumor
-0.1
473
Tumor
-0.1
514
Normal
-0.1
862
Normal
-0.1
918
Normal
-0.1
738
Normal
-0.1
262
Normal
-0.1
874
Normal
-0.1
572
Normal
-0.1
976
Normal
-0.1
497
Tumor
-0.1
462
Normal
-0.1
228
Normal
-0.1
958
Normal
-0.1
185
Tumor
-0.1
432
Normal
-0.1
328
Normal
-0.1
698
Normal
-0.1
467
Tumor
-0.1
196
Normal
-0.1
355
Tumor
-0.1
743
Tumor
-0.1
286
Normal
-0.1
636
Normal
-0.1
364
Normal
-0.1
145
Tumor
-0.1
352
Normal
-0.1
746
Normal
-0.1
722
Normal
-0.1
628
Normal
-0.1
332
Normal
-0.1
356
Normal
-0.1
786
Normal
-0.1
1016
Normal
-0.1
267
Tumor
-0.1
924
Normal
-0.1
714
Normal
-0.1
526
Normal
-0.1
756
Normal
-0.1
474
Normal
-0.1
195
Tumor
-0.1
392
Normal
-0.1
818
Normal
-0.1
436
Normal
-0.2
411
Tumor
-0.2
461
Tumor
-0.2
716
Normal
-0.2
192
Normal
-0.2
618
Normal
-0.2
477
Tumor
-0.2
424
Normal
-0.2
564
Normal
-0.2
161
Tumor
-0.2
214
Normal
-0.2
433
Tumor
-0.2
188
Normal
-0.2
297
Tumor
-0.2
648
Normal
-0.2
314
Normal
-0.2
516
Normal
-0.2
466
Normal
-0.2
737
Tumor
-0.2
232
Normal
-0.2
1042
Normal
-0.2
384
Normal
-0.2
671
Tumor
-0.2
344
Normal
-0.2
965
Tumor
-0.2
362
Normal
-0.2
568
Normal
-0.2
515
Tumor
-0.2
878
Normal
-0.2
416
Normal
-0.2
482
Normal
-0.2
123
Tumor
-0.2
563
Tumor
-0.2
858
Normal
-0.2
111
Normal
-0.2
664
Normal
-0.2
146
Normal
-0.2
187
Tumor
-0.2
574
Normal
-0.2
742
Normal
-0.2
171
Tumor
-0.2
124
Normal
-0.2
341
Tumor
-0.2
744
Normal
-0.2
148
Normal
-0.2
444
Normal
-0.2
278
Normal
-0.2
428
Normal
-0.2
388
Normal
-0.2
272
Normal
-0.2
126
Normal
-0.2
376
Normal
-0.2
354
Normal
-0.2
386
Normal
-0.2
387
Tumor
-0.2
128
Normal
-0.2
162
Normal
-0.2
642
Normal
-0.2
368
Normal
-0.2
137
Tumor
-0.2
422
Normal
-0.2
231
Tumor
-0.2
136
Normal
-0.2
138
Normal
-0.2
342
Normal
-0.2
396
Normal
-0.2
298
Normal
-0.2
172
Normal
-0.2
394
Normal
-0.2
446
Normal
-0.3
186
Normal
-0.3
358
Normal
-0.3
913
Tumor
-0.3
662
Normal
-0.3
456
Normal
-0.3
426
Normal
-0.3
463
Tumor
-0.3
464
Normal
-0.3
666
Normal
-0.3
112
Tumor
-0.3
365
Tumor
-0.3
312
Normal
-0.3
414
Normal
-0.3
222
Normal
-0.3
268
Normal
-0.3
672
Normal
-0.3
258
Normal
-0.3
353
Tumor
-0.3
468
Normal
-0.3
647
Tumor
-0.3
114
Normal
-0.4
465
Tumor
-0.4
132
Normal
-0.4
141
Tumor
-0.4
366
Normal
-0.4
937
Tumor
-0.4
277
Tumor
-0.4
452
Normal
-0.5
865
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
