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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
1.1
435
Tumor
1.0
1041
Tumor
0.9
123
Tumor
0.9
171
Tumor
0.8
231
Tumor
0.8
957
Tumor
0.8
937
Tumor
0.7
267
Tumor
0.7
427
Tumor
0.7
187
Tumor
0.7
671
Tumor
0.6
361
Tumor
0.6
473
Tumor
0.6
533
Tumor
0.6
925
Tumor
0.6
1025
Tumor
0.6
743
Tumor
0.5
635
Tumor
0.5
965
Tumor
0.5
615
Tumor
0.5
1045
Tumor
0.5
557
Tumor
0.5
865
Tumor
0.4
571
Tumor
0.4
433
Tumor
0.4
497
Tumor
0.4
367
Tumor
0.4
423
Tumor
0.4
618
Normal
0.4
477
Tumor
0.4
713
Tumor
0.4
567
Tumor
0.4
627
Tumor
0.4
535
Tumor
0.4
363
Tumor
0.4
191
Tumor
0.3
573
Tumor
0.3
967
Tumor
0.3
127
Tumor
0.3
258
Normal
0.3
724
Normal
0.3
465
Tumor
0.3
327
Tumor
0.3
665
Tumor
0.3
911
Tumor
0.3
446
Normal
0.3
517
Tumor
0.3
715
Tumor
0.3
147
Tumor
0.3
467
Tumor
0.3
741
Tumor
0.3
617
Tumor
0.2
355
Tumor
0.2
413
Tumor
0.2
977
Tumor
0.2
271
Tumor
0.2
451
Tumor
0.2
436
Normal
0.2
642
Normal
0.2
616
Normal
0.2
411
Tumor
0.2
1021
Tumor
0.2
272
Normal
0.2
195
Tumor
0.2
464
Normal
0.2
483
Tumor
0.2
391
Tumor
0.2
227
Tumor
0.2
232
Normal
0.2
861
Tumor
0.2
745
Tumor
0.1
685
Tumor
0.1
662
Normal
0.1
351
Tumor
0.1
132
Normal
0.1
778
Normal
0.1
432
Normal
0.1
471
Tumor
0.1
525
Tumor
0.1
331
Tumor
0.1
137
Tumor
0.1
131
Tumor
0.1
648
Normal
0.1
285
Tumor
0.1
953
Tumor
0.1
746
Normal
0.1
1046
Normal
0.1
468
Normal
0.1
526
Normal
0.1
452
Normal
0.1
262
Normal
0.1
278
Normal
0.1
395
Tumor
0.1
695
Tumor
0.1
628
Normal
0.1
456
Normal
0.1
883
Tumor
0.1
721
Tumor
0.1
145
Tumor
0.1
376
Normal
0.1
514
Normal
0.1
396
Normal
0.1
944
Normal
0.1
672
Normal
0.0
1031
Tumor
0.0
186
Normal
0.0
365
Tumor
0.0
314
Normal
0.0
387
Tumor
0.0
357
Tumor
0.0
817
Tumor
0.0
664
Normal
0.0
978
Normal
0.0
722
Normal
0.0
1013
Tumor
0.0
268
Normal
0.0
491
Tumor
0.0
138
Normal
0.0
136
Normal
0.0
341
Tumor
0.0
981
Tumor
0.0
546
Normal
0.0
261
Tumor
0.0
356
Normal
0.0
951
Tumor
0.0
553
Tumor
0.0
257
Tumor
0.0
394
Normal
0.0
756
Normal
0.0
161
Tumor
0.0
528
Normal
0.0
513
Tumor
0.0
368
Normal
0.0
332
Normal
0.0
636
Normal
0.0
698
Normal
0.0
923
Tumor
0.0
448
Normal
0.0
554
Normal
0.0
663
Tumor
0.0
444
Normal
0.0
128
Normal
0.0
738
Normal
0.0
913
Tumor
0.0
358
Normal
0.0
1042
Normal
0.0
466
Normal
0.0
424
Normal
0.0
1026
Normal
0.0
755
Tumor
0.0
867
Tumor
0.0
666
Normal
0.0
188
Normal
0.0
742
Normal
0.0
786
Normal
0.0
185
Tumor
0.0
1014
Normal
0.0
1032
Normal
0.0
488
Normal
0.0
463
Tumor
0.0
114
Normal
0.0
312
Normal
0.0
534
Normal
0.0
386
Normal
0.0
481
Tumor
0.0
516
Normal
0.0
493
Tumor
0.0
353
Tumor
-0.1
915
Tumor
-0.1
362
Normal
-0.1
426
Normal
-0.1
696
Normal
-0.1
1028
Normal
-0.1
113
Tumor
-0.1
222
Normal
-0.1
851
Tumor
-0.1
388
Normal
-0.1
1022
Normal
-0.1
434
Normal
-0.1
393
Tumor
-0.1
135
Tumor
-0.1
1044
Normal
-0.1
428
Normal
-0.1
564
Normal
-0.1
384
Normal
-0.1
172
Normal
-0.1
342
Normal
-0.1
375
Tumor
-0.1
142
Normal
-0.1
482
Normal
-0.1
462
Normal
-0.1
982
Normal
-0.1
647
Tumor
-0.1
912
Normal
-0.1
366
Normal
-0.1
148
Normal
-0.1
572
Normal
-0.1
126
Normal
-0.1
1016
Normal
-0.1
723
Tumor
-0.1
716
Normal
-0.1
881
Tumor
-0.1
472
Normal
-0.1
518
Normal
-0.1
864
Normal
-0.1
938
Normal
-0.1
1015
Tumor
-0.1
217
Tumor
-0.1
228
Normal
-0.1
213
Tumor
-0.1
926
Normal
-0.1
392
Normal
-0.1
868
Normal
-0.1
877
Tumor
-0.1
112
Tumor
-0.1
415
Tumor
-0.1
192
Normal
-0.1
785
Tumor
-0.1
984
Normal
-0.1
422
Normal
-0.1
494
Normal
-0.1
536
Normal
-0.1
364
Normal
-0.1
983
Tumor
-0.1
111
Normal
-0.1
641
Tumor
-0.1
777
Tumor
-0.2
223
Tumor
-0.2
814
Normal
-0.2
298
Normal
-0.2
568
Normal
-0.2
921
Tumor
-0.2
146
Normal
-0.2
162
Normal
-0.2
212
Normal
-0.2
958
Normal
-0.2
484
Normal
-0.2
211
Tumor
-0.2
214
Normal
-0.2
964
Normal
-0.2
124
Normal
-0.2
524
Normal
-0.2
328
Normal
-0.2
447
Tumor
-0.2
661
Tumor
-0.2
196
Normal
-0.2
414
Normal
-0.2
218
Normal
-0.2
443
Tumor
-0.2
714
Normal
-0.2
416
Normal
-0.2
498
Normal
-0.2
538
Normal
-0.2
884
Normal
-0.2
344
Normal
-0.2
976
Normal
-0.2
963
Tumor
-0.2
574
Normal
-0.2
313
Tumor
-0.2
727
Tumor
-0.2
487
Tumor
-0.2
343
Tumor
-0.2
863
Tumor
-0.2
352
Normal
-0.2
297
Tumor
-0.2
354
Normal
-0.2
975
Tumor
-0.2
914
Normal
-0.2
728
Normal
-0.2
916
Normal
-0.2
474
Normal
-0.2
918
Normal
-0.2
478
Normal
-0.2
431
Tumor
-0.2
858
Normal
-0.2
686
Normal
-0.2
954
Normal
-0.2
283
Tumor
-0.2
943
Tumor
-0.2
956
Normal
-0.3
284
Normal
-0.3
968
Normal
-0.3
125
Tumor
-0.3
385
Tumor
-0.3
421
Tumor
-0.3
277
Tumor
-0.3
952
Normal
-0.3
221
Tumor
-0.3
882
Normal
-0.3
224
Normal
-0.3
445
Tumor
-0.3
955
Tumor
-0.3
383
Tumor
-0.3
852
Normal
-0.3
697
Tumor
-0.3
563
Tumor
-0.3
141
Tumor
-0.3
492
Normal
-0.3
558
Normal
-0.3
412
Normal
-0.3
461
Tumor
-0.3
857
Tumor
-0.3
1043
Tumor
-0.4
862
Normal
-0.4
818
Normal
-0.4
922
Normal
-0.4
813
Tumor
-0.4
924
Normal
-0.4
816
Normal
-0.4
824
Normal
-0.4
866
Normal
-0.4
455
Tumor
-0.4
286
Normal
-0.4
966
Normal
-0.4
523
Tumor
-0.4
873
Tumor
-0.4
917
Tumor
-0.5
737
Tumor
-0.5
311
Tumor
-0.5
823
Tumor
-0.5
878
Normal
-0.5
545
Tumor
-0.5
527
Tumor
-0.5
425
Tumor
-0.5
874
Normal
-0.5
515
Tumor
-0.6
815
Tumor
-0.6
744
Normal
-0.7
1027
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
