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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STARD7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
112.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
110.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
109.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
107.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
104.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
93.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
90.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
89.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
87.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
78.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
76.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
74.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
71.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
70.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
69.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
66.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
65.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
65.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
65.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
62.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
61.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
61.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
60.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
58.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
57.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
57.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
57.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
57.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
56.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
55.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
55.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
54.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
53.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
52.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
52.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
52.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
52.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
51.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
50.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
49.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
49.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
47.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
47.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
46.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
44.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
44.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
44.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
44.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
43.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
42.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
41.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
41.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
41.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
40.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
39.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
39.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
38.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
38.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
37.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
37.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
37.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
36.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
36.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
36.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
35.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
35.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
33.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
29.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
29.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
28.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STARD7 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.3
Number of samples
231
Samples
Sample
Description
TPM
DO45117
0 years, female, NA, stage:2, dead, 1110 days
114.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
95.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
85.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
82.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
82.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
81.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
81.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
77.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
73.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
73.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
72.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
71.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
67.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
67.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
66.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
64.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
64.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
63.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
63.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
62.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
61.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
61.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
60.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
60.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
60.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
60.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
60.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
59.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
59.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
58.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
58.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
57.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
57.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
57.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
57.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
57.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
57.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
55.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
55.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
54.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
54.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
54.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
53.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
52.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
51.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
51.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
51.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
51.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
51.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
50.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
50.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
49.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
49.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
49.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
49.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
49.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
48.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
48.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
48.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
48.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
47.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
47.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
47.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
46.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
46.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
45.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
45.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
45.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
44.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
44.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
44.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
44.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
44.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
43.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
43.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
43.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
43.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
42.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
42.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
42.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
42.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
41.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
41.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
41.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
41.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
40.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
40.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
40.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
40.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
40.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
40.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
39.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
39.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
38.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
38.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
38.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
38.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
37.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
37.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
37.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
36.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
36.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
36.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
35.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
34.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
33.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
33.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
30.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.3
571
Tumor
1.2
627
Tumor
1.1
641
Tumor
1.0
1013
Tumor
1.0
967
Tumor
0.9
911
Tumor
0.9
925
Tumor
0.8
513
Tumor
0.8
435
Tumor
0.8
1015
Tumor
0.8
357
Tumor
0.8
695
Tumor
0.7
915
Tumor
0.7
567
Tumor
0.7
785
Tumor
0.7
367
Tumor
0.7
953
Tumor
0.7
1043
Tumor
0.7
365
Tumor
0.7
745
Tumor
0.6
743
Tumor
0.6
533
Tumor
0.6
227
Tumor
0.6
537
Tumor
0.6
341
Tumor
0.6
483
Tumor
0.6
391
Tumor
0.6
477
Tumor
0.6
727
Tumor
0.6
685
Tumor
0.6
615
Tumor
0.6
231
Tumor
0.6
1031
Tumor
0.5
525
Tumor
0.5
883
Tumor
0.5
983
Tumor
0.5
411
Tumor
0.5
473
Tumor
0.5
661
Tumor
0.5
427
Tumor
0.5
1041
Tumor
0.5
171
Tumor
0.5
737
Tumor
0.5
451
Tumor
0.5
724
Normal
0.5
1027
Tumor
0.5
363
Tumor
0.5
923
Tumor
0.5
351
Tumor
0.5
445
Tumor
0.5
443
Tumor
0.5
863
Tumor
0.4
951
Tumor
0.4
977
Tumor
0.4
497
Tumor
0.4
285
Tumor
0.4
517
Tumor
0.4
921
Tumor
0.4
963
Tumor
0.4
361
Tumor
0.4
671
Tumor
0.4
535
Tumor
0.4
493
Tumor
0.4
573
Tumor
0.4
271
Tumor
0.4
665
Tumor
0.4
557
Tumor
0.4
423
Tumor
0.3
741
Tumor
0.3
755
Tumor
0.3
937
Tumor
0.3
433
Tumor
0.3
957
Tumor
0.3
563
Tumor
0.3
491
Tumor
0.3
487
Tumor
0.3
553
Tumor
0.3
221
Tumor
0.3
1021
Tumor
0.3
857
Tumor
0.3
123
Tumor
0.3
387
Tumor
0.3
385
Tumor
0.3
383
Tumor
0.3
465
Tumor
0.3
815
Tumor
0.3
131
Tumor
0.3
313
Tumor
0.2
141
Tumor
0.2
481
Tumor
0.2
867
Tumor
0.2
463
Tumor
0.2
635
Tumor
0.2
715
Tumor
0.2
713
Tumor
0.2
211
Tumor
0.2
277
Tumor
0.2
297
Tumor
0.2
267
Tumor
0.2
861
Tumor
0.2
257
Tumor
0.2
1045
Tumor
0.2
213
Tumor
0.2
413
Tumor
0.2
421
Tumor
0.2
127
Tumor
0.2
461
Tumor
0.2
913
Tumor
0.2
343
Tumor
0.2
697
Tumor
0.2
355
Tumor
0.2
375
Tumor
0.2
393
Tumor
0.2
471
Tumor
0.1
358
Normal
0.1
217
Tumor
0.1
873
Tumor
0.1
137
Tumor
0.1
354
Normal
0.1
492
Normal
0.1
368
Normal
0.1
663
Tumor
0.1
813
Tumor
0.1
331
Tumor
0.1
943
Tumor
0.1
1025
Tumor
0.1
395
Tumor
0.1
366
Normal
0.1
817
Tumor
0.1
327
Tumor
0.1
113
Tumor
0.1
881
Tumor
0.1
284
Normal
0.1
756
Normal
0.0
261
Tumor
0.0
975
Tumor
0.0
416
Normal
0.0
814
Normal
0.0
478
Normal
0.0
415
Tumor
0.0
534
Normal
0.0
721
Tumor
0.0
518
Normal
0.0
342
Normal
0.0
353
Tumor
0.0
425
Tumor
0.0
145
Tumor
0.0
981
Tumor
0.0
914
Normal
0.0
528
Normal
0.0
344
Normal
0.0
262
Normal
0.0
964
Normal
0.0
434
Normal
0.0
514
Normal
0.0
384
Normal
0.0
536
Normal
0.0
258
Normal
0.0
617
Tumor
0.0
195
Tumor
0.0
966
Normal
0.0
714
Normal
0.0
362
Normal
0.0
882
Normal
0.0
224
Normal
0.0
823
Tumor
0.0
161
Tumor
0.0
864
Normal
-0.1
352
Normal
-0.1
666
Normal
-0.1
527
Tumor
-0.1
447
Tumor
-0.1
286
Normal
-0.1
268
Normal
-0.1
272
Normal
-0.1
628
Normal
-0.1
545
Tumor
-0.1
916
Normal
-0.1
147
Tumor
-0.1
364
Normal
-0.1
482
Normal
-0.1
884
Normal
-0.1
746
Normal
-0.1
922
Normal
-0.1
777
Tumor
-0.1
312
Normal
-0.1
642
Normal
-0.1
786
Normal
-0.1
672
Normal
-0.1
172
Normal
-0.1
954
Normal
-0.1
474
Normal
-0.1
436
Normal
-0.1
494
Normal
-0.1
515
Tumor
-0.1
328
Normal
-0.1
462
Normal
-0.1
912
Normal
-0.1
978
Normal
-0.1
877
Tumor
-0.1
212
Normal
-0.1
524
Normal
-0.1
278
Normal
-0.1
648
Normal
-0.1
955
Tumor
-0.1
283
Tumor
-0.1
392
Normal
-0.1
851
Tumor
-0.1
976
Normal
-0.1
516
Normal
-0.1
738
Normal
-0.1
686
Normal
-0.1
412
Normal
-0.1
432
Normal
-0.1
662
Normal
-0.1
125
Tumor
-0.1
112
Tumor
-0.1
636
Normal
-0.1
917
Tumor
-0.1
222
Normal
-0.1
218
Normal
-0.1
944
Normal
-0.1
865
Tumor
-0.2
968
Normal
-0.2
356
Normal
-0.2
1016
Normal
-0.2
554
Normal
-0.2
716
Normal
-0.2
878
Normal
-0.2
311
Tumor
-0.2
498
Normal
-0.2
526
Normal
-0.2
958
Normal
-0.2
616
Normal
-0.2
185
Tumor
-0.2
538
Normal
-0.2
574
Normal
-0.2
431
Tumor
-0.2
926
Normal
-0.2
396
Normal
-0.2
455
Tumor
-0.2
232
Normal
-0.2
647
Tumor
-0.2
572
Normal
-0.2
956
Normal
-0.2
162
Normal
-0.2
696
Normal
-0.2
488
Normal
-0.2
188
Normal
-0.2
866
Normal
-0.2
386
Normal
-0.2
148
Normal
-0.2
228
Normal
-0.2
444
Normal
-0.2
472
Normal
-0.2
664
Normal
-0.2
332
Normal
-0.2
484
Normal
-0.2
546
Normal
-0.2
918
Normal
-0.2
1028
Normal
-0.2
924
Normal
-0.2
722
Normal
-0.2
862
Normal
-0.2
728
Normal
-0.2
874
Normal
-0.2
858
Normal
-0.2
938
Normal
-0.2
982
Normal
-0.2
564
Normal
-0.2
223
Tumor
-0.2
376
Normal
-0.2
744
Normal
-0.2
984
Normal
-0.2
466
Normal
-0.2
142
Normal
-0.2
952
Normal
-0.2
558
Normal
-0.2
1014
Normal
-0.3
1032
Normal
-0.3
868
Normal
-0.3
192
Normal
-0.3
446
Normal
-0.3
187
Tumor
-0.3
742
Normal
-0.3
568
Normal
-0.3
618
Normal
-0.3
1044
Normal
-0.3
388
Normal
-0.3
186
Normal
-0.3
298
Normal
-0.3
394
Normal
-0.3
448
Normal
-0.3
523
Tumor
-0.3
214
Normal
-0.3
1042
Normal
-0.3
135
Tumor
-0.3
778
Normal
-0.3
146
Normal
-0.3
422
Normal
-0.3
824
Normal
-0.3
464
Normal
-0.3
314
Normal
-0.3
424
Normal
-0.3
1026
Normal
-0.4
428
Normal
-0.4
114
Normal
-0.4
128
Normal
-0.4
138
Normal
-0.4
136
Normal
-0.4
196
Normal
-0.4
723
Tumor
-0.4
124
Normal
-0.4
816
Normal
-0.4
452
Normal
-0.4
467
Tumor
-0.4
132
Normal
-0.4
468
Normal
-0.4
414
Normal
-0.4
1022
Normal
-0.4
1046
Normal
-0.4
126
Normal
-0.4
456
Normal
-0.5
818
Normal
-0.5
111
Normal
-0.5
698
Normal
-0.5
852
Normal
-0.5
426
Normal
-0.5
191
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
