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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPIE is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
46.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPIE is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.6
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
35.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
0.8
477
Tumor
0.6
411
Tumor
0.6
965
Tumor
0.6
743
Tumor
0.5
727
Tumor
0.5
131
Tumor
0.5
1027
Tumor
0.5
953
Tumor
0.5
756
Normal
0.5
647
Tumor
0.4
755
Tumor
0.4
1013
Tumor
0.4
967
Tumor
0.4
355
Tumor
0.4
513
Tumor
0.4
571
Tumor
0.4
661
Tumor
0.4
465
Tumor
0.4
943
Tumor
0.4
695
Tumor
0.4
423
Tumor
0.3
545
Tumor
0.3
497
Tumor
0.3
865
Tumor
0.3
741
Tumor
0.3
425
Tumor
0.3
356
Normal
0.3
977
Tumor
0.3
573
Tumor
0.3
482
Normal
0.3
737
Tumor
0.2
491
Tumor
0.2
472
Normal
0.2
473
Tumor
0.2
785
Tumor
0.2
1045
Tumor
0.2
445
Tumor
0.2
416
Normal
0.2
663
Tumor
0.2
777
Tumor
0.2
925
Tumor
0.2
481
Tumor
0.2
724
Normal
0.2
462
Normal
0.2
313
Tumor
0.2
1031
Tumor
0.2
431
Tumor
0.2
466
Normal
0.2
867
Tumor
0.2
1025
Tumor
0.2
546
Normal
0.2
414
Normal
0.2
861
Tumor
0.2
1046
Normal
0.2
723
Tumor
0.2
728
Normal
0.2
328
Normal
0.2
161
Tumor
0.2
921
Tumor
0.2
488
Normal
0.2
817
Tumor
0.2
975
Tumor
0.2
1021
Tumor
0.2
882
Normal
0.2
515
Tumor
0.2
185
Tumor
0.2
951
Tumor
0.2
162
Normal
0.2
1043
Tumor
0.2
455
Tumor
0.2
494
Normal
0.2
963
Tumor
0.2
516
Normal
0.2
514
Normal
0.2
884
Normal
0.2
517
Tumor
0.2
523
Tumor
0.1
213
Tumor
0.1
923
Tumor
0.1
537
Tumor
0.1
435
Tumor
0.1
172
Normal
0.1
428
Normal
0.1
527
Tumor
0.1
463
Tumor
0.1
1032
Normal
0.1
461
Tumor
0.1
433
Tumor
0.1
484
Normal
0.1
424
Normal
0.1
227
Tumor
0.1
922
Normal
0.1
964
Normal
0.1
427
Tumor
0.1
277
Tumor
0.1
533
Tumor
0.1
261
Tumor
0.1
824
Normal
0.1
331
Tumor
0.1
857
Tumor
0.1
422
Normal
0.1
138
Normal
0.1
873
Tumor
0.1
393
Tumor
0.1
195
Tumor
0.1
864
Normal
0.1
976
Normal
0.1
285
Tumor
0.1
467
Tumor
0.1
525
Tumor
0.1
926
Normal
0.1
283
Tumor
0.1
746
Normal
0.1
231
Tumor
0.1
452
Normal
0.1
698
Normal
0.1
744
Normal
0.1
426
Normal
0.1
391
Tumor
0.1
191
Tumor
0.1
742
Normal
0.1
534
Normal
0.1
136
Normal
0.1
918
Normal
0.1
858
Normal
0.1
944
Normal
0.1
412
Normal
0.1
954
Normal
0.1
187
Tumor
0.1
142
Normal
0.1
518
Normal
0.1
464
Normal
0.0
696
Normal
0.0
958
Normal
0.0
786
Normal
0.0
487
Tumor
0.0
186
Normal
0.0
524
Normal
0.0
474
Normal
0.0
364
Normal
0.0
738
Normal
0.0
912
Normal
0.0
528
Normal
0.0
1026
Normal
0.0
132
Normal
0.0
468
Normal
0.0
567
Tumor
0.0
413
Tumor
0.0
814
Normal
0.0
881
Tumor
0.0
221
Tumor
0.0
228
Normal
0.0
278
Normal
0.0
137
Tumor
0.0
574
Normal
0.0
145
Tumor
0.0
714
Normal
0.0
911
Tumor
0.0
222
Normal
0.0
314
Normal
0.0
443
Tumor
0.0
483
Tumor
0.0
665
Tumor
0.0
526
Normal
0.0
123
Tumor
0.0
863
Tumor
0.0
564
Normal
0.0
878
Normal
0.0
297
Tumor
0.0
956
Normal
0.0
868
Normal
0.0
327
Tumor
0.0
966
Normal
0.0
267
Tumor
0.0
262
Normal
0.0
914
Normal
0.0
358
Normal
0.0
312
Normal
0.0
112
Tumor
0.0
1028
Normal
0.0
272
Normal
0.0
535
Tumor
0.0
563
Tumor
0.0
146
Normal
0.0
924
Normal
0.0
862
Normal
0.0
493
Tumor
0.0
666
Normal
0.0
196
Normal
0.0
127
Tumor
0.0
268
Normal
0.0
366
Normal
0.0
125
Tumor
0.0
572
Normal
0.0
376
Normal
0.0
715
Tumor
0.0
271
Tumor
0.0
456
Normal
0.0
538
Normal
0.0
432
Normal
0.0
212
Normal
0.0
214
Normal
0.0
286
Normal
0.0
983
Tumor
0.0
916
Normal
0.0
232
Normal
0.0
716
Normal
0.0
955
Tumor
0.0
223
Tumor
0.0
188
Normal
0.0
813
Tumor
-0.1
982
Normal
-0.1
866
Normal
-0.1
113
Tumor
-0.1
713
Tumor
-0.1
938
Normal
-0.1
554
Normal
-0.1
448
Normal
-0.1
1044
Normal
-0.1
978
Normal
-0.1
171
Tumor
-0.1
394
Normal
-0.1
745
Tumor
-0.1
874
Normal
-0.1
148
Normal
-0.1
446
Normal
-0.1
141
Tumor
-0.1
671
Tumor
-0.1
818
Normal
-0.1
211
Tumor
-0.1
1014
Normal
-0.1
332
Normal
-0.1
1016
Normal
-0.1
558
Normal
-0.1
436
Normal
-0.1
298
Normal
-0.1
396
Normal
-0.1
937
Tumor
-0.1
375
Tumor
-0.1
386
Normal
-0.1
917
Tumor
-0.1
1041
Tumor
-0.1
126
Normal
-0.1
363
Tumor
-0.1
915
Tumor
-0.1
664
Normal
-0.1
686
Normal
-0.1
192
Normal
-0.1
952
Normal
-0.1
492
Normal
-0.1
1022
Normal
-0.1
498
Normal
-0.1
362
Normal
-0.1
722
Normal
-0.1
388
Normal
-0.1
114
Normal
-0.1
478
Normal
-0.1
662
Normal
-0.1
434
Normal
-0.1
111
Normal
-0.1
447
Tumor
-0.1
553
Tumor
-0.1
415
Tumor
-0.1
284
Normal
-0.1
568
Normal
-0.1
628
Normal
-0.1
471
Tumor
-0.1
648
Normal
-0.1
1042
Normal
-0.1
353
Tumor
-0.1
218
Normal
-0.1
128
Normal
-0.1
365
Tumor
-0.1
852
Normal
-0.1
536
Normal
-0.1
361
Tumor
-0.1
851
Tumor
-0.1
883
Tumor
-0.1
224
Normal
-0.1
367
Tumor
-0.1
672
Normal
-0.1
823
Tumor
-0.1
421
Tumor
-0.1
635
Tumor
-0.1
392
Normal
-0.2
984
Normal
-0.2
385
Tumor
-0.2
618
Normal
-0.2
627
Tumor
-0.2
816
Normal
-0.2
147
Tumor
-0.2
124
Normal
-0.2
968
Normal
-0.2
383
Tumor
-0.2
368
Normal
-0.2
387
Tumor
-0.2
217
Tumor
-0.2
311
Tumor
-0.2
815
Tumor
-0.2
444
Normal
-0.2
384
Normal
-0.2
344
Normal
-0.2
877
Tumor
-0.2
258
Normal
-0.2
451
Tumor
-0.2
778
Normal
-0.2
395
Tumor
-0.2
352
Normal
-0.2
913
Tumor
-0.2
357
Tumor
-0.2
354
Normal
-0.2
616
Normal
-0.2
636
Normal
-0.2
342
Normal
-0.2
343
Tumor
-0.2
697
Tumor
-0.3
257
Tumor
-0.3
642
Normal
-0.3
351
Tumor
-0.3
685
Tumor
-0.3
1015
Tumor
-0.3
557
Tumor
-0.3
341
Tumor
-0.3
615
Tumor
-0.3
135
Tumor
-0.3
981
Tumor
-0.3
617
Tumor
-0.3
641
Tumor
-0.3
721
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
