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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMAP2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
81.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
80.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
77.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
75.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
67.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
66.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
65.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
65.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
63.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
63.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
60.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
59.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
58.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
58.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
58.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
57.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
57.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
57.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
56.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
56.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
56.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
55.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
55.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
54.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
54.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
54.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
54.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
53.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
52.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
49.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
48.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
47.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
47.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
47.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
46.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
46.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
46.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
46.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
46.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
46.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
45.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
45.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
45.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
44.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
44.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
44.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
44.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
43.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
43.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
43.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
43.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
42.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
42.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
41.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
41.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
41.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
40.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
40.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
40.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
37.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
37.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
37.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
34.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
33.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
33.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
32.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
27.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
25.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMAP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.9
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
142.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
84.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
83.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
82.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
76.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
71.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
69.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
67.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
64.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
63.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
62.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
57.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
56.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
56.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
56.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
55.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
52.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
52.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
51.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
51.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
50.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
49.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
49.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
48.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
48.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
48.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
47.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
46.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
45.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
45.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
44.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
44.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
44.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
44.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
43.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
43.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
43.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
43.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
42.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
40.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
40.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
40.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
40.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
40.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
39.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
39.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
38.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
38.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
38.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
37.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
36.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
36.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
35.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
34.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
33.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
32.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
31.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
30.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
21.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
0.6
1021
Tumor
0.6
1027
Tumor
0.6
487
Tumor
0.5
533
Tumor
0.5
527
Tumor
0.5
557
Tumor
0.5
112
Tumor
0.5
647
Tumor
0.5
341
Tumor
0.4
957
Tumor
0.4
777
Tumor
0.4
411
Tumor
0.4
571
Tumor
0.4
922
Normal
0.3
425
Tumor
0.3
981
Tumor
0.3
883
Tumor
0.3
537
Tumor
0.3
745
Tumor
0.3
863
Tumor
0.3
524
Normal
0.3
211
Tumor
0.3
223
Tumor
0.3
393
Tumor
0.3
1025
Tumor
0.3
113
Tumor
0.3
944
Normal
0.3
912
Normal
0.3
528
Normal
0.3
467
Tumor
0.3
461
Tumor
0.3
851
Tumor
0.3
493
Tumor
0.3
984
Normal
0.3
434
Normal
0.3
391
Tumor
0.3
518
Normal
0.3
968
Normal
0.2
873
Tumor
0.2
538
Normal
0.2
728
Normal
0.2
824
Normal
0.2
966
Normal
0.2
1042
Normal
0.2
685
Tumor
0.2
862
Normal
0.2
926
Normal
0.2
756
Normal
0.2
554
Normal
0.2
686
Normal
0.2
396
Normal
0.2
456
Normal
0.2
563
Tumor
0.2
884
Normal
0.2
755
Tumor
0.2
882
Normal
0.2
145
Tumor
0.2
286
Normal
0.2
344
Normal
0.2
138
Normal
0.2
515
Tumor
0.2
452
Normal
0.2
918
Normal
0.2
852
Normal
0.2
954
Normal
0.2
413
Tumor
0.2
864
Normal
0.2
723
Tumor
0.2
858
Normal
0.2
1031
Tumor
0.2
786
Normal
0.2
443
Tumor
0.2
778
Normal
0.2
218
Normal
0.2
818
Normal
0.2
368
Normal
0.2
955
Tumor
0.2
481
Tumor
0.2
746
Normal
0.2
416
Normal
0.2
662
Normal
0.2
332
Normal
0.2
737
Tumor
0.2
497
Tumor
0.2
464
Normal
0.2
358
Normal
0.2
953
Tumor
0.2
868
Normal
0.2
488
Normal
0.2
136
Normal
0.2
695
Tumor
0.2
958
Normal
0.2
964
Normal
0.2
672
Normal
0.2
916
Normal
0.2
468
Normal
0.2
526
Normal
0.2
224
Normal
0.2
664
Normal
0.2
342
Normal
0.2
514
Normal
0.2
513
Tumor
0.2
924
Normal
0.1
572
Normal
0.1
142
Normal
0.1
1026
Normal
0.1
573
Tumor
0.1
433
Tumor
0.1
426
Normal
0.1
742
Normal
0.1
284
Normal
0.1
477
Tumor
0.1
432
Normal
0.1
914
Normal
0.1
465
Tumor
0.1
214
Normal
0.1
187
Tumor
0.1
545
Tumor
0.1
574
Normal
0.1
262
Normal
0.1
327
Tumor
0.1
534
Normal
0.1
415
Tumor
0.1
923
Tumor
0.1
696
Normal
0.1
952
Normal
0.1
1013
Tumor
0.1
213
Tumor
0.1
462
Normal
0.1
451
Tumor
0.1
343
Tumor
0.1
484
Normal
0.1
1016
Normal
0.1
421
Tumor
0.1
661
Tumor
0.1
714
Normal
0.1
498
Normal
0.1
422
Normal
0.1
232
Normal
0.1
478
Normal
0.1
298
Normal
0.1
516
Normal
0.1
212
Normal
0.1
146
Normal
0.1
878
Normal
0.1
558
Normal
0.1
195
Tumor
0.1
698
Normal
0.1
386
Normal
0.1
866
Normal
0.1
721
Tumor
0.1
1015
Tumor
0.1
444
Normal
0.1
494
Normal
0.1
395
Tumor
0.1
1014
Normal
0.1
636
Normal
0.1
938
Normal
0.1
1028
Normal
0.1
716
Normal
0.1
482
Normal
0.1
1044
Normal
0.1
568
Normal
0.1
492
Normal
0.1
352
Normal
0.1
472
Normal
0.1
362
Normal
0.1
111
Normal
0.1
546
Normal
0.1
355
Tumor
0.1
525
Tumor
0.1
126
Normal
0.1
564
Normal
0.1
283
Tumor
0.1
978
Normal
0.1
1022
Normal
0.1
191
Tumor
0.1
663
Tumor
0.1
951
Tumor
0.1
228
Normal
0.1
424
Normal
0.1
357
Tumor
0.1
383
Tumor
0.1
172
Normal
0.1
124
Normal
0.1
222
Normal
0.1
356
Normal
0.1
813
Tumor
0.1
366
Normal
0.1
483
Tumor
0.1
471
Tumor
0.1
412
Normal
0.0
186
Normal
0.0
913
Tumor
0.0
474
Normal
0.0
823
Tumor
0.0
617
Tumor
0.0
162
Normal
0.0
867
Tumor
0.0
666
Normal
0.0
387
Tumor
0.0
628
Normal
0.0
553
Tumor
0.0
744
Normal
0.0
392
Normal
0.0
431
Tumor
0.0
414
Normal
0.0
642
Normal
0.0
976
Normal
0.0
128
Normal
0.0
1032
Normal
0.0
258
Normal
0.0
618
Normal
0.0
268
Normal
0.0
466
Normal
0.0
738
Normal
0.0
874
Normal
0.0
635
Tumor
0.0
376
Normal
0.0
816
Normal
0.0
132
Normal
0.0
921
Tumor
0.0
423
Tumor
0.0
272
Normal
0.0
982
Normal
0.0
196
Normal
0.0
123
Tumor
0.0
261
Tumor
0.0
278
Normal
0.0
915
Tumor
0.0
446
Normal
0.0
114
Normal
0.0
861
Tumor
0.0
881
Tumor
0.0
436
Normal
0.0
367
Tumor
0.0
665
Tumor
0.0
937
Tumor
0.0
217
Tumor
0.0
231
Tumor
0.0
125
Tumor
0.0
715
Tumor
0.0
137
Tumor
0.0
388
Normal
0.0
616
Normal
0.0
627
Tumor
0.0
185
Tumor
0.0
148
Normal
0.0
817
Tumor
-0.1
722
Normal
-0.1
221
Tumor
-0.1
448
Normal
-0.1
312
Normal
-0.1
354
Normal
-0.1
141
Tumor
-0.1
814
Normal
-0.1
536
Normal
-0.1
648
Normal
-0.1
445
Tumor
-0.1
857
Tumor
-0.1
314
Normal
-0.1
394
Normal
-0.1
956
Normal
-0.1
428
Normal
-0.1
965
Tumor
-0.1
975
Tumor
-0.1
724
Normal
-0.1
328
Normal
-0.1
257
Tumor
-0.1
911
Tumor
-0.1
865
Tumor
-0.1
1046
Normal
-0.1
271
Tumor
-0.1
463
Tumor
-0.1
1045
Tumor
-0.1
384
Normal
-0.1
741
Tumor
-0.1
188
Normal
-0.1
943
Tumor
-0.1
1041
Tumor
-0.2
473
Tumor
-0.2
365
Tumor
-0.2
435
Tumor
-0.2
785
Tumor
-0.2
361
Tumor
-0.2
977
Tumor
-0.2
697
Tumor
-0.2
192
Normal
-0.2
364
Normal
-0.2
455
Tumor
-0.2
727
Tumor
-0.2
967
Tumor
-0.2
161
Tumor
-0.2
427
Tumor
-0.2
523
Tumor
-0.2
567
Tumor
-0.2
131
Tumor
-0.2
917
Tumor
-0.2
285
Tumor
-0.2
535
Tumor
-0.2
491
Tumor
-0.2
127
Tumor
-0.2
353
Tumor
-0.2
713
Tumor
-0.2
963
Tumor
-0.3
615
Tumor
-0.3
297
Tumor
-0.3
311
Tumor
-0.3
1043
Tumor
-0.3
277
Tumor
-0.3
135
Tumor
-0.3
375
Tumor
-0.3
147
Tumor
-0.3
171
Tumor
-0.3
983
Tumor
-0.4
447
Tumor
-0.4
363
Tumor
-0.4
267
Tumor
-0.4
517
Tumor
-0.4
815
Tumor
-0.4
641
Tumor
-0.4
313
Tumor
-0.4
877
Tumor
-0.5
671
Tumor
-0.5
385
Tumor
-0.6
331
Tumor
-0.6
743
Tumor
-0.6
227
Tumor
-0.7
351
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
