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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YTHDC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YTHDC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.4
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.1
965
Tumor
1.0
331
Tumor
1.0
131
Tumor
0.9
661
Tumor
0.8
967
Tumor
0.7
865
Tumor
0.7
367
Tumor
0.7
983
Tumor
0.7
385
Tumor
0.6
957
Tumor
0.6
351
Tumor
0.6
647
Tumor
0.6
877
Tumor
0.6
727
Tumor
0.6
211
Tumor
0.6
663
Tumor
0.6
123
Tumor
0.5
425
Tumor
0.5
535
Tumor
0.5
463
Tumor
0.5
411
Tumor
0.5
363
Tumor
0.5
1013
Tumor
0.5
665
Tumor
0.5
671
Tumor
0.5
715
Tumor
0.5
161
Tumor
0.5
977
Tumor
0.5
545
Tumor
0.5
497
Tumor
0.5
467
Tumor
0.5
517
Tumor
0.4
724
Normal
0.4
413
Tumor
0.4
355
Tumor
0.4
487
Tumor
0.4
313
Tumor
0.4
737
Tumor
0.4
817
Tumor
0.4
695
Tumor
0.4
523
Tumor
0.4
881
Tumor
0.4
395
Tumor
0.4
277
Tumor
0.4
553
Tumor
0.4
447
Tumor
0.4
861
Tumor
0.4
297
Tumor
0.4
937
Tumor
0.4
815
Tumor
0.3
883
Tumor
0.3
963
Tumor
0.3
341
Tumor
0.3
431
Tumor
0.3
867
Tumor
0.3
427
Tumor
0.3
443
Tumor
0.3
921
Tumor
0.3
537
Tumor
0.3
448
Normal
0.3
567
Tumor
0.3
911
Tumor
0.3
641
Tumor
0.3
943
Tumor
0.3
327
Tumor
0.3
285
Tumor
0.3
393
Tumor
0.3
951
Tumor
0.3
125
Tumor
0.3
112
Tumor
0.3
375
Tumor
0.2
221
Tumor
0.2
271
Tumor
0.2
1025
Tumor
0.2
473
Tumor
0.2
557
Tumor
0.2
785
Tumor
0.2
135
Tumor
0.2
141
Tumor
0.2
391
Tumor
0.2
741
Tumor
0.2
925
Tumor
0.2
536
Normal
0.2
187
Tumor
0.2
455
Tumor
0.2
573
Tumor
0.2
223
Tumor
0.2
858
Normal
0.2
635
Tumor
0.2
353
Tumor
0.2
697
Tumor
0.2
451
Tumor
0.2
127
Tumor
0.2
192
Normal
0.2
975
Tumor
0.2
488
Normal
0.2
267
Tumor
0.2
433
Tumor
0.1
415
Tumor
0.1
981
Tumor
0.1
755
Tumor
0.1
311
Tumor
0.1
387
Tumor
0.1
491
Tumor
0.1
1015
Tumor
0.1
1041
Tumor
0.1
915
Tumor
0.1
1031
Tumor
0.1
383
Tumor
0.1
814
Normal
0.1
283
Tumor
0.1
813
Tumor
0.1
445
Tumor
0.1
423
Tumor
0.1
923
Tumor
0.1
478
Normal
0.1
721
Tumor
0.1
483
Tumor
0.1
357
Tumor
0.1
913
Tumor
0.1
563
Tumor
0.1
851
Tumor
0.1
1021
Tumor
0.1
191
Tumor
0.1
498
Normal
0.1
571
Tumor
0.1
435
Tumor
0.1
538
Normal
0.1
884
Normal
0.1
777
Tumor
0.1
481
Tumor
0.1
857
Tumor
0.1
824
Normal
0.1
493
Tumor
0.1
465
Tumor
0.1
261
Tumor
0.1
533
Tumor
0.1
917
Tumor
0.1
823
Tumor
0.1
113
Tumor
0.1
1046
Normal
0.1
1042
Normal
0.1
471
Tumor
0.0
617
Tumor
0.0
332
Normal
0.0
978
Normal
0.0
434
Normal
0.0
231
Tumor
0.0
171
Tumor
0.0
527
Tumor
0.0
227
Tumor
0.0
1032
Normal
0.0
484
Normal
0.0
873
Tumor
0.0
1014
Normal
0.0
922
Normal
0.0
818
Normal
0.0
955
Tumor
0.0
128
Normal
0.0
461
Tumor
0.0
513
Tumor
0.0
361
Tumor
0.0
524
Normal
0.0
686
Normal
0.0
526
Normal
0.0
195
Tumor
0.0
217
Tumor
0.0
1044
Normal
0.0
426
Normal
0.0
422
Normal
0.0
916
Normal
0.0
1045
Tumor
0.0
953
Tumor
0.0
716
Normal
0.0
268
Normal
0.0
966
Normal
0.0
863
Tumor
0.0
492
Normal
0.0
386
Normal
0.0
924
Normal
0.0
436
Normal
0.0
912
Normal
0.0
698
Normal
0.0
878
Normal
0.0
452
Normal
0.0
356
Normal
0.0
114
Normal
0.0
298
Normal
0.0
554
Normal
0.0
713
Tumor
0.0
343
Tumor
0.0
744
Normal
0.0
421
Tumor
0.0
145
Tumor
0.0
982
Normal
0.0
494
Normal
0.0
728
Normal
0.0
456
Normal
0.0
468
Normal
0.0
342
Normal
0.0
525
Tumor
0.0
964
Normal
0.0
816
Normal
0.0
852
Normal
0.0
918
Normal
0.0
1028
Normal
0.0
976
Normal
-0.1
257
Tumor
-0.1
958
Normal
-0.1
424
Normal
-0.1
212
Normal
-0.1
477
Tumor
-0.1
742
Normal
-0.1
312
Normal
-0.1
213
Tumor
-0.1
352
Normal
-0.1
124
Normal
-0.1
137
Tumor
-0.1
534
Normal
-0.1
384
Normal
-0.1
956
Normal
-0.1
662
Normal
-0.1
984
Normal
-0.1
926
Normal
-0.1
1026
Normal
-0.1
574
Normal
-0.1
564
Normal
-0.1
482
Normal
-0.1
938
Normal
-0.1
185
Tumor
-0.1
472
Normal
-0.1
146
Normal
-0.1
126
Normal
-0.1
142
Normal
-0.1
284
Normal
-0.1
428
Normal
-0.1
1027
Tumor
-0.1
432
Normal
-0.1
572
Normal
-0.1
1022
Normal
-0.1
358
Normal
-0.1
396
Normal
-0.1
636
Normal
-0.1
196
Normal
-0.1
444
Normal
-0.1
412
Normal
-0.1
685
Tumor
-0.1
866
Normal
-0.1
664
Normal
-0.1
466
Normal
-0.1
944
Normal
-0.1
365
Tumor
-0.1
147
Tumor
-0.1
148
Normal
-0.1
1043
Tumor
-0.1
446
Normal
-0.1
864
Normal
-0.1
882
Normal
-0.1
528
Normal
-0.1
328
Normal
-0.1
558
Normal
-0.1
224
Normal
-0.1
222
Normal
-0.1
362
Normal
-0.1
628
Normal
-0.1
778
Normal
-0.1
954
Normal
-0.2
516
Normal
-0.2
162
Normal
-0.2
515
Tumor
-0.2
354
Normal
-0.2
376
Normal
-0.2
111
Normal
-0.2
416
Normal
-0.2
714
Normal
-0.2
642
Normal
-0.2
1016
Normal
-0.2
368
Normal
-0.2
546
Normal
-0.2
364
Normal
-0.2
968
Normal
-0.2
746
Normal
-0.2
696
Normal
-0.2
868
Normal
-0.2
344
Normal
-0.2
314
Normal
-0.2
672
Normal
-0.2
414
Normal
-0.2
952
Normal
-0.2
666
Normal
-0.2
278
Normal
-0.2
214
Normal
-0.2
474
Normal
-0.2
874
Normal
-0.2
188
Normal
-0.2
172
Normal
-0.2
286
Normal
-0.2
462
Normal
-0.2
568
Normal
-0.2
514
Normal
-0.2
218
Normal
-0.2
464
Normal
-0.2
862
Normal
-0.2
648
Normal
-0.2
738
Normal
-0.2
786
Normal
-0.2
518
Normal
-0.2
258
Normal
-0.2
723
Tumor
-0.2
228
Normal
-0.2
914
Normal
-0.2
186
Normal
-0.2
388
Normal
-0.3
262
Normal
-0.3
392
Normal
-0.3
616
Normal
-0.3
394
Normal
-0.3
366
Normal
-0.3
232
Normal
-0.3
627
Tumor
-0.3
136
Normal
-0.3
756
Normal
-0.3
272
Normal
-0.3
615
Tumor
-0.3
138
Normal
-0.3
722
Normal
-0.3
618
Normal
-0.3
745
Tumor
-0.4
132
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
