MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.2 nTPM
HPA Brain:30.2 nTPM
GTEx:2.2 nTPM
FANTOM5:20.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.2
2666 Male, age 74, left hemisphere 39.6
2219 Male, age 76, both hemispheres 33.5
2586 Male, age 75, left hemisphere 33.3
1830 Male, age 51, unknown 33.2
1833 Male, age 53, unknown 30.9
1827 Male, age 72, unknown 27.5
2828 Female, age 72, unknown 27.4
2411 Female, age 72, unknown 26.9
2019 Male, age 18, unknown 25.9
1870 Female, age 42, unknown 24.2
Dorsal raphe nucleus
nTPM: 25.7
2047 Male, age 72, unknown 30.1
2016 Female, age 72, unknown 28.4
1828 Male, age 53, unknown 25.0
2750 Male, age 76, both hemispheres 24.6
2298 Female, age 72, unknown 20.6
Inferior colliculus
nTPM: 29.0
2849 Male, age 72, unknown 32.0
1890 Male, age 53, unknown 30.4
1848 Female, age 42, unknown 28.3
2097 Female, age 72, unknown 25.3
Median raphe nucleus
nTPM: 26.4
2220 Male, age 76, midline 26.4
Periaquaductal grey, anterior
nTPM: 26.4
1947 Male, age 18, unknown 27.7
1795 Male, age 51, unknown 26.1
2502 Female, age 75, unknown 25.5
Periaquaductal grey, dorsal
nTPM: 28.5
2464 Female, age 72, unknown 30.0
2850 Male, age 76, both hemispheres 29.1
1840 Male, age 53, unknown 28.3
1831 Male, age 72, unknown 26.9
Periaquaductal grey, lateral
nTPM: 28.0
2140 Male, age 76, both hemispheres 33.0
2053 Male, age 18, unknown 29.1
2272 Male, age 74, both hemispheres 22.0
Pretectal area
nTPM: 26.5
2316 Male, age 76, right hemisphere 32.8
2407 Male, age 75, both hemispheres 32.1
2825 Male, age 18, unknown 31.7
2667 Female, age 75, unknown 28.2
2224 Female, age 72, unknown 25.7
1944 Female, age 72, unknown 24.7
1815 Male, age 53, unknown 24.6
1816 Male, age 51, unknown 23.7
1817 Female, age 42, unknown 23.5
2007 Male, age 72, unknown 22.7
2273 Male, age 74, both hemispheres 21.7
Red nucleus
nTPM: 28.3
2588 Male, age 74, left hemisphere 36.6
2584 Male, age 75, left hemisphere 35.3
2823 Male, age 76, right hemisphere 30.3
1865 Male, age 51, unknown 29.4
1904 Male, age 53, unknown 29.4
2769 Male, age 72, unknown 27.8
2227 Male, age 72, unknown 27.0
1954 Female, age 42, unknown 25.8
2503 Female, age 72, unknown 25.5
2725 Female, age 75, unknown 24.5
2785 Male, age 18, unknown 24.5
1821 Female, age 72, unknown 23.9
Substantia nigra
nTPM: 26.7
2241 Male, age 72, unknown 31.5
2583 Male, age 75, right hemisphere 31.0
2665 Male, age 74, both hemispheres 29.1
2699 Male, age 18, unknown 28.2
1941 Male, age 53, unknown 28.0
2590 Female, age 75, unknown 26.6
1851 Male, age 51, unknown 24.9
1889 Female, age 72, unknown 22.9
2409 Female, age 72, unknown 22.8
1916 Female, age 42, unknown 21.5
Superior colliculus
nTPM: 27.3
2664 Male, age 75, both hemispheres 30.4
2668 Female, age 75, unknown 30.0
1839 Male, age 51, unknown 28.3
1895 Male, age 76, right hemisphere 28.0
1913 Female, age 42, unknown 27.8
2587 Male, age 74, left hemisphere 26.9
2087 Female, age 72, unknown 26.7
2261 Male, age 18, unknown 25.5
1796 Male, age 53, unknown 25.2
1995 Male, age 72, unknown 24.5
Ventral tegmental area
nTPM: 24.6
2218 Male, age 76, both hemispheres 28.2
2223 Female, age 72, unknown 25.5
2021 Male, age 53, unknown 24.3
1942 Male, age 51, unknown 24.2
2410 Female, age 72, unknown 22.9
1915 Female, age 42, unknown 22.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.2
Samples: 139

Max nTPM: 4.2
Min nTPM: 1.0
Std nTPM: 0.5
Median nTPM: 2.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 4.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 4.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 3.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 3.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 3.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 3.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 3.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 3.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 3.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.7
FF:10158-103A5 76 years, female 20.7

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