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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF13 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
90.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
72.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
61.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
61.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
58.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
56.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
54.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
54.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
51.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
50.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
49.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
47.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
46.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
46.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
45.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
44.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
44.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
43.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
40.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
40.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
39.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
39.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
39.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
37.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
36.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
34.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
34.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
33.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
32.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
31.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
27.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF13 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.7
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
134.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
63.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
49.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
47.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
41.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
38.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
35.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
34.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
33.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
2.5
715
Tumor
1.8
413
Tumor
1.5
451
Tumor
1.4
1025
Tumor
1.2
385
Tumor
1.2
493
Tumor
1.2
227
Tumor
1.2
713
Tumor
1.2
697
Tumor
1.1
425
Tumor
1.1
363
Tumor
1.0
743
Tumor
1.0
573
Tumor
1.0
823
Tumor
0.8
192
Normal
0.8
483
Tumor
0.8
983
Tumor
0.8
223
Tumor
0.7
221
Tumor
0.7
545
Tumor
0.7
517
Tumor
0.6
975
Tumor
0.6
467
Tumor
0.5
1043
Tumor
0.5
937
Tumor
0.5
863
Tumor
0.5
817
Tumor
0.5
112
Tumor
0.5
214
Normal
0.4
963
Tumor
0.4
343
Tumor
0.4
1041
Tumor
0.4
222
Normal
0.4
331
Tumor
0.4
191
Tumor
0.4
395
Tumor
0.4
877
Tumor
0.4
415
Tumor
0.4
213
Tumor
0.3
917
Tumor
0.3
557
Tumor
0.3
492
Normal
0.3
815
Tumor
0.3
196
Normal
0.3
217
Tumor
0.3
218
Normal
0.3
851
Tumor
0.3
1031
Tumor
0.3
745
Tumor
0.2
534
Normal
0.2
641
Tumor
0.2
755
Tumor
0.2
525
Tumor
0.2
777
Tumor
0.2
921
Tumor
0.2
421
Tumor
0.1
311
Tumor
0.1
967
Tumor
0.1
571
Tumor
0.1
443
Tumor
0.1
491
Tumor
0.1
686
Normal
0.1
813
Tumor
0.1
954
Normal
0.1
721
Tumor
0.1
384
Normal
0.1
393
Tumor
0.1
137
Tumor
0.1
966
Normal
0.1
814
Normal
0.1
131
Tumor
0.1
187
Tumor
0.1
195
Tumor
0.1
951
Tumor
0.0
746
Normal
0.0
978
Normal
0.0
211
Tumor
0.0
516
Normal
0.0
186
Normal
0.0
498
Normal
0.0
536
Normal
0.0
1042
Normal
0.0
535
Tumor
0.0
447
Tumor
0.0
125
Tumor
0.0
943
Tumor
0.0
135
Tumor
0.0
478
Normal
0.0
861
Tumor
0.0
925
Tumor
0.0
314
Normal
0.0
524
Normal
0.0
737
Tumor
0.0
965
Tumor
0.0
388
Normal
0.0
1015
Tumor
0.0
515
Tumor
0.0
546
Normal
0.0
462
Normal
0.0
361
Tumor
-0.1
142
Normal
-0.1
857
Tumor
-0.1
816
Normal
-0.1
162
Normal
-0.1
284
Normal
-0.1
716
Normal
-0.1
563
Tumor
-0.1
297
Tumor
-0.1
574
Normal
-0.1
283
Tumor
-0.1
538
Normal
-0.1
852
Normal
-0.1
278
Normal
-0.1
224
Normal
-0.1
968
Normal
-0.1
435
Tumor
-0.1
484
Normal
-0.1
914
Normal
-0.1
472
Normal
-0.1
938
Normal
-0.1
862
Normal
-0.1
494
Normal
-0.1
271
Tumor
-0.1
185
Tumor
-0.1
353
Tumor
-0.1
172
Normal
-0.1
916
Normal
-0.1
488
Normal
-0.1
864
Normal
-0.1
955
Tumor
-0.1
1022
Normal
-0.1
824
Normal
-0.1
394
Normal
-0.1
497
Tumor
-0.1
952
Normal
-0.1
474
Normal
-0.1
568
Normal
-0.2
392
Normal
-0.2
564
Normal
-0.2
362
Normal
-0.2
984
Normal
-0.2
366
Normal
-0.2
1026
Normal
-0.2
433
Tumor
-0.2
671
Tumor
-0.2
148
Normal
-0.2
868
Normal
-0.2
685
Tumor
-0.2
742
Normal
-0.2
526
Normal
-0.2
123
Tumor
-0.2
351
Tumor
-0.2
514
Normal
-0.2
452
Normal
-0.2
1027
Tumor
-0.2
958
Normal
-0.2
461
Tumor
-0.2
481
Tumor
-0.2
572
Normal
-0.2
723
Tumor
-0.2
387
Tumor
-0.2
261
Tumor
-0.2
867
Tumor
-0.2
866
Normal
-0.2
661
Tumor
-0.2
355
Tumor
-0.2
786
Normal
-0.2
1032
Normal
-0.2
212
Normal
-0.2
444
Normal
-0.2
873
Tumor
-0.2
724
Normal
-0.2
147
Tumor
-0.2
126
Normal
-0.2
412
Normal
-0.2
944
Normal
-0.2
446
Normal
-0.2
145
Tumor
-0.2
558
Normal
-0.2
1044
Normal
-0.2
858
Normal
-0.2
161
Tumor
-0.2
617
Tumor
-0.2
878
Normal
-0.2
477
Tumor
-0.2
386
Normal
-0.2
396
Normal
-0.2
356
Normal
-0.2
926
Normal
-0.2
818
Normal
-0.2
523
Tumor
-0.3
448
Normal
-0.3
778
Normal
-0.3
1046
Normal
-0.3
1014
Normal
-0.3
365
Tumor
-0.3
132
Normal
-0.3
913
Tumor
-0.3
976
Normal
-0.3
696
Normal
-0.3
977
Tumor
-0.3
285
Tumor
-0.3
722
Normal
-0.3
874
Normal
-0.3
738
Normal
-0.3
432
Normal
-0.3
912
Normal
-0.3
171
Tumor
-0.3
728
Normal
-0.3
257
Tumor
-0.3
911
Tumor
-0.3
482
Normal
-0.3
881
Tumor
-0.3
518
Normal
-0.3
364
Normal
-0.3
267
Tumor
-0.3
352
Normal
-0.3
231
Tumor
-0.3
554
Normal
-0.3
756
Normal
-0.3
698
Normal
-0.3
714
Normal
-0.3
124
Normal
-0.3
744
Normal
-0.3
328
Normal
-0.3
741
Tumor
-0.3
915
Tumor
-0.3
468
Normal
-0.3
368
Normal
-0.3
455
Tumor
-0.3
466
Normal
-0.3
428
Normal
-0.3
1021
Tumor
-0.3
883
Tumor
-0.3
956
Normal
-0.3
513
Tumor
-0.3
456
Normal
-0.3
258
Normal
-0.3
923
Tumor
-0.3
882
Normal
-0.4
463
Tumor
-0.4
332
Normal
-0.4
367
Tumor
-0.4
376
Normal
-0.4
375
Tumor
-0.4
981
Tumor
-0.4
272
Normal
-0.4
268
Normal
-0.4
922
Normal
-0.4
1028
Normal
-0.4
957
Tumor
-0.4
785
Tumor
-0.4
434
Normal
-0.4
964
Normal
-0.4
1016
Normal
-0.4
188
Normal
-0.4
228
Normal
-0.4
924
Normal
-0.4
128
Normal
-0.4
286
Normal
-0.4
232
Normal
-0.4
1045
Tumor
-0.4
138
Normal
-0.4
464
Normal
-0.4
383
Tumor
-0.4
918
Normal
-0.4
982
Normal
-0.4
327
Tumor
-0.4
136
Normal
-0.5
953
Tumor
-0.5
354
Normal
-0.5
424
Normal
-0.5
426
Normal
-0.5
141
Tumor
-0.5
436
Normal
-0.5
465
Tumor
-0.5
422
Normal
-0.5
647
Tumor
-0.5
487
Tumor
-0.5
262
Normal
-0.5
146
Normal
-0.5
416
Normal
-0.5
312
Normal
-0.5
391
Tumor
-0.5
411
Tumor
-0.5
695
Tumor
-0.5
111
Normal
-0.5
533
Tumor
-0.6
616
Normal
-0.6
567
Tumor
-0.6
727
Tumor
-0.6
344
Normal
-0.6
445
Tumor
-0.6
277
Tumor
-0.6
662
Normal
-0.6
114
Normal
-0.6
414
Normal
-0.6
884
Normal
-0.6
672
Normal
-0.6
635
Tumor
-0.6
527
Tumor
-0.7
423
Tumor
-0.7
473
Tumor
-0.7
642
Normal
-0.7
553
Tumor
-0.7
615
Tumor
-0.7
636
Normal
-0.7
358
Normal
-0.7
427
Tumor
-0.7
341
Tumor
-0.7
537
Tumor
-0.7
665
Tumor
-0.7
113
Tumor
-0.7
298
Normal
-0.7
127
Tumor
-0.7
618
Normal
-0.7
628
Normal
-0.8
865
Tumor
-0.8
627
Tumor
-0.8
663
Tumor
-0.8
666
Normal
-0.8
648
Normal
-0.8
664
Normal
-0.8
342
Normal
-0.9
313
Tumor
-0.9
1013
Tumor
-0.9
528
Normal
-0.9
357
Tumor
-1.0
431
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
