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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XPO1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
58.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
48.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
36.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XPO1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.4
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
165.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
88.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
79.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
75.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
75.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
75.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
73.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
70.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
67.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
65.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
62.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
60.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
57.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
57.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
57.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
56.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
56.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
55.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
54.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
54.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
53.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
52.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
51.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
51.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
50.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
49.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
49.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
48.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
48.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
48.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
47.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
47.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
46.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
46.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
46.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
46.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
45.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
45.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
45.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
44.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
44.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
44.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
43.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
43.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
43.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
42.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
42.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
41.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
41.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
39.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
39.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
38.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
37.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
36.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
36.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
36.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
35.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
35.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
34.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
33.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
30.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
30.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
0.8
127
Tumor
0.8
425
Tumor
0.7
123
Tumor
0.7
813
Tumor
0.7
112
Tumor
0.7
391
Tumor
0.7
367
Tumor
0.7
313
Tumor
0.6
743
Tumor
0.6
665
Tumor
0.6
727
Tumor
0.6
341
Tumor
0.6
271
Tumor
0.6
567
Tumor
0.5
357
Tumor
0.5
331
Tumor
0.5
385
Tumor
0.5
171
Tumor
0.5
411
Tumor
0.5
463
Tumor
0.4
661
Tumor
0.4
573
Tumor
0.4
737
Tumor
0.4
1021
Tumor
0.4
983
Tumor
0.4
427
Tumor
0.4
435
Tumor
0.4
977
Tumor
0.4
445
Tumor
0.4
277
Tumor
0.4
641
Tumor
0.4
817
Tumor
0.4
185
Tumor
0.4
671
Tumor
0.4
161
Tumor
0.3
815
Tumor
0.3
724
Normal
0.3
965
Tumor
0.3
125
Tumor
0.3
221
Tumor
0.3
257
Tumor
0.3
443
Tumor
0.3
465
Tumor
0.3
814
Normal
0.3
1027
Tumor
0.3
635
Tumor
0.3
343
Tumor
0.3
865
Tumor
0.3
883
Tumor
0.3
777
Tumor
0.3
741
Tumor
0.3
383
Tumor
0.3
431
Tumor
0.3
231
Tumor
0.3
433
Tumor
0.3
615
Tumor
0.3
423
Tumor
0.2
213
Tumor
0.2
877
Tumor
0.2
283
Tumor
0.2
353
Tumor
0.2
413
Tumor
0.2
285
Tumor
0.2
297
Tumor
0.2
421
Tumor
0.2
387
Tumor
0.2
647
Tumor
0.2
487
Tumor
0.2
517
Tumor
0.2
663
Tumor
0.2
375
Tumor
0.2
113
Tumor
0.2
497
Tumor
0.2
131
Tumor
0.2
715
Tumor
0.2
477
Tumor
0.2
1013
Tumor
0.2
227
Tumor
0.2
695
Tumor
0.2
365
Tumor
0.2
147
Tumor
0.2
1043
Tumor
0.2
467
Tumor
0.2
557
Tumor
0.1
745
Tumor
0.1
217
Tumor
0.1
967
Tumor
0.1
617
Tumor
0.1
491
Tumor
0.1
685
Tumor
0.1
873
Tumor
0.1
563
Tumor
0.1
911
Tumor
0.1
571
Tumor
0.1
126
Normal
0.1
951
Tumor
0.1
344
Normal
0.1
114
Normal
0.1
363
Tumor
0.1
1015
Tumor
0.1
141
Tumor
0.1
135
Tumor
0.1
451
Tumor
0.1
627
Tumor
0.1
881
Tumor
0.1
863
Tumor
0.1
261
Tumor
0.1
192
Normal
0.1
461
Tumor
0.1
434
Normal
0.0
111
Normal
0.0
921
Tumor
0.0
975
Tumor
0.0
444
Normal
0.0
195
Tumor
0.0
361
Tumor
0.0
447
Tumor
0.0
713
Tumor
0.0
537
Tumor
0.0
267
Tumor
0.0
366
Normal
0.0
311
Tumor
0.0
523
Tumor
0.0
963
Tumor
0.0
393
Tumor
0.0
124
Normal
0.0
368
Normal
0.0
395
Tumor
0.0
525
Tumor
0.0
354
Normal
0.0
342
Normal
0.0
128
Normal
0.0
137
Tumor
0.0
923
Tumor
0.0
384
Normal
0.0
268
Normal
0.0
386
Normal
0.0
376
Normal
0.0
188
Normal
0.0
352
Normal
0.0
744
Normal
0.0
426
Normal
0.0
314
Normal
0.0
332
Normal
0.0
392
Normal
0.0
1031
Tumor
0.0
362
Normal
0.0
223
Tumor
0.0
172
Normal
0.0
148
Normal
0.0
298
Normal
0.0
272
Normal
0.0
414
Normal
0.0
146
Normal
0.0
953
Tumor
0.0
186
Normal
-0.1
432
Normal
-0.1
553
Tumor
-0.1
191
Tumor
-0.1
436
Normal
-0.1
456
Normal
-0.1
211
Tumor
-0.1
162
Normal
-0.1
1025
Tumor
-0.1
394
Normal
-0.1
446
Normal
-0.1
358
Normal
-0.1
218
Normal
-0.1
262
Normal
-0.1
721
Tumor
-0.1
278
Normal
-0.1
388
Normal
-0.1
483
Tumor
-0.1
424
Normal
-0.1
493
Tumor
-0.1
222
Normal
-0.1
642
Normal
-0.1
943
Tumor
-0.1
327
Tumor
-0.1
636
Normal
-0.1
187
Tumor
-0.1
422
Normal
-0.1
1041
Tumor
-0.1
396
Normal
-0.1
755
Tumor
-0.1
196
Normal
-0.1
132
Normal
-0.1
145
Tumor
-0.1
232
Normal
-0.1
452
Normal
-0.1
515
Tumor
-0.1
618
Normal
-0.1
851
Tumor
-0.1
746
Normal
-0.1
214
Normal
-0.1
912
Normal
-0.1
533
Tumor
-0.1
471
Tumor
-0.1
666
Normal
-0.1
428
Normal
-0.1
778
Normal
-0.1
785
Tumor
-0.1
738
Normal
-0.1
138
Normal
-0.1
136
Normal
-0.1
914
Normal
-0.1
312
Normal
-0.1
925
Tumor
-0.1
513
Tumor
-0.1
662
Normal
-0.2
224
Normal
-0.2
628
Normal
-0.2
415
Tumor
-0.2
648
Normal
-0.2
574
Normal
-0.2
672
Normal
-0.2
664
Normal
-0.2
464
Normal
-0.2
228
Normal
-0.2
355
Tumor
-0.2
258
Normal
-0.2
861
Tumor
-0.2
981
Tumor
-0.2
742
Normal
-0.2
867
Tumor
-0.2
468
Normal
-0.2
455
Tumor
-0.2
466
Normal
-0.2
816
Normal
-0.2
1016
Normal
-0.2
286
Normal
-0.2
857
Tumor
-0.2
917
Tumor
-0.2
1028
Normal
-0.2
568
Normal
-0.2
1026
Normal
-0.2
878
Normal
-0.2
915
Tumor
-0.2
984
Normal
-0.2
284
Normal
-0.2
545
Tumor
-0.2
786
Normal
-0.2
686
Normal
-0.2
616
Normal
-0.2
527
Tumor
-0.2
722
Normal
-0.2
913
Tumor
-0.2
823
Tumor
-0.2
1014
Normal
-0.2
356
Normal
-0.2
714
Normal
-0.2
1045
Tumor
-0.2
982
Normal
-0.2
882
Normal
-0.2
818
Normal
-0.2
1022
Normal
-0.2
498
Normal
-0.3
564
Normal
-0.3
723
Tumor
-0.3
462
Normal
-0.3
473
Tumor
-0.3
416
Normal
-0.3
142
Normal
-0.3
558
Normal
-0.3
328
Normal
-0.3
535
Tumor
-0.3
756
Normal
-0.3
697
Tumor
-0.3
924
Normal
-0.3
858
Normal
-0.3
978
Normal
-0.3
524
Normal
-0.3
824
Normal
-0.3
364
Normal
-0.3
412
Normal
-0.3
966
Normal
-0.3
957
Tumor
-0.3
518
Normal
-0.3
716
Normal
-0.3
862
Normal
-0.3
968
Normal
-0.3
937
Tumor
-0.3
728
Normal
-0.3
481
Tumor
-0.3
516
Normal
-0.3
866
Normal
-0.3
526
Normal
-0.3
212
Normal
-0.3
448
Normal
-0.3
874
Normal
-0.3
864
Normal
-0.3
572
Normal
-0.3
492
Normal
-0.3
884
Normal
-0.3
472
Normal
-0.3
1044
Normal
-0.3
488
Normal
-0.3
976
Normal
-0.3
528
Normal
-0.4
1032
Normal
-0.4
964
Normal
-0.4
538
Normal
-0.4
944
Normal
-0.4
955
Tumor
-0.4
696
Normal
-0.4
514
Normal
-0.4
484
Normal
-0.4
1046
Normal
-0.4
478
Normal
-0.4
1042
Normal
-0.4
534
Normal
-0.4
546
Normal
-0.4
698
Normal
-0.4
852
Normal
-0.4
868
Normal
-0.4
482
Normal
-0.4
554
Normal
-0.4
952
Normal
-0.4
474
Normal
-0.4
494
Normal
-0.4
958
Normal
-0.4
954
Normal
-0.4
916
Normal
-0.4
926
Normal
-0.4
918
Normal
-0.4
922
Normal
-0.4
536
Normal
-0.5
938
Normal
-0.5
956
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
