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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STRADB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
99.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
96.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
88.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
87.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
84.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
78.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
76.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
70.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
69.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
69.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
67.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
65.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
65.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
65.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
65.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
64.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
64.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
59.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
56.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
56.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
56.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
56.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
55.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
55.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
55.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
54.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
54.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
54.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
53.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
52.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
51.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
50.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
50.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
50.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
49.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
49.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
48.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
48.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
47.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
47.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
47.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
47.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
45.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
45.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
45.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
45.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
44.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
44.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
43.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
42.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
42.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
42.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
42.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
42.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
41.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
41.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
41.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
40.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
39.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
39.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
39.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
39.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
39.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
38.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
37.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
37.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
36.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
36.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
36.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
36.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
36.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
36.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
36.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
35.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
35.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
34.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
33.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
33.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
32.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
31.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
29.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
27.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STRADB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.4
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
56.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
55.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
55.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
52.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
52.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
51.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
51.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
47.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
46.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
46.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
46.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
45.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
45.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
42.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
42.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
40.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
39.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
38.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
38.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
37.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
37.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
36.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
34.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
33.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
29.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
29.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
517
Tumor
2.5
514
Normal
1.4
743
Tumor
1.1
1022
Normal
0.9
1032
Normal
0.9
376
Normal
0.8
695
Tumor
0.8
128
Normal
0.8
568
Normal
0.8
472
Normal
0.8
227
Tumor
0.7
394
Normal
0.7
396
Normal
0.7
745
Tumor
0.7
617
Tumor
0.7
452
Normal
0.7
1028
Normal
0.7
938
Normal
0.7
564
Normal
0.7
954
Normal
0.7
462
Normal
0.7
482
Normal
0.6
186
Normal
0.6
481
Tumor
0.6
1013
Tumor
0.6
558
Normal
0.6
185
Tumor
0.6
742
Normal
0.6
526
Normal
0.6
1046
Normal
0.6
114
Normal
0.6
698
Normal
0.5
162
Normal
0.5
464
Normal
0.5
228
Normal
0.5
328
Normal
0.5
368
Normal
0.5
571
Tumor
0.5
188
Normal
0.5
882
Normal
0.5
524
Normal
0.5
286
Normal
0.5
911
Tumor
0.5
388
Normal
0.5
1014
Normal
0.5
978
Normal
0.5
738
Normal
0.5
697
Tumor
0.5
362
Normal
0.5
471
Tumor
0.5
427
Tumor
0.5
148
Normal
0.5
456
Normal
0.5
111
Normal
0.5
425
Tumor
0.5
572
Normal
0.4
984
Normal
0.4
912
Normal
0.4
944
Normal
0.4
618
Normal
0.4
982
Normal
0.4
981
Tumor
0.4
574
Normal
0.4
172
Normal
0.4
366
Normal
0.4
364
Normal
0.4
956
Normal
0.4
1026
Normal
0.4
914
Normal
0.4
518
Normal
0.4
741
Tumor
0.4
112
Tumor
0.4
884
Normal
0.4
474
Normal
0.4
365
Tumor
0.4
127
Tumor
0.4
1016
Normal
0.4
913
Tumor
0.4
468
Normal
0.4
212
Normal
0.4
284
Normal
0.4
1045
Tumor
0.4
463
Tumor
0.4
384
Normal
0.3
546
Normal
0.3
534
Normal
0.3
648
Normal
0.3
755
Tumor
0.3
868
Normal
0.3
528
Normal
0.3
713
Tumor
0.3
465
Tumor
0.3
124
Normal
0.3
878
Normal
0.3
466
Normal
0.3
131
Tumor
0.3
356
Normal
0.3
861
Tumor
0.3
123
Tumor
0.3
635
Tumor
0.3
473
Tumor
0.3
436
Normal
0.3
881
Tumor
0.3
161
Tumor
0.3
187
Tumor
0.3
392
Normal
0.2
1042
Normal
0.2
616
Normal
0.2
222
Normal
0.2
416
Normal
0.2
955
Tumor
0.2
867
Tumor
0.2
478
Normal
0.2
883
Tumor
0.2
386
Normal
0.2
641
Tumor
0.2
113
Tumor
0.2
477
Tumor
0.2
535
Tumor
0.2
722
Normal
0.2
818
Normal
0.2
443
Tumor
0.2
1015
Tumor
0.2
536
Normal
0.2
1043
Tumor
0.1
214
Normal
0.1
823
Tumor
0.1
455
Tumor
0.1
858
Normal
0.1
874
Normal
0.1
421
Tumor
0.1
126
Normal
0.1
448
Normal
0.1
815
Tumor
0.1
816
Normal
0.1
432
Normal
0.1
554
Normal
0.1
777
Tumor
0.1
451
Tumor
0.1
1044
Normal
0.1
367
Tumor
0.1
636
Normal
0.1
863
Tumor
0.1
877
Tumor
0.1
361
Tumor
0.1
778
Normal
0.1
446
Normal
0.1
714
Normal
0.1
223
Tumor
0.1
423
Tumor
0.1
642
Normal
0.1
977
Tumor
0.1
461
Tumor
0.1
865
Tumor
0.1
224
Normal
0.0
862
Normal
0.0
363
Tumor
0.0
447
Tumor
0.0
737
Tumor
0.0
864
Normal
0.0
387
Tumor
0.0
873
Tumor
0.0
866
Normal
0.0
135
Tumor
0.0
744
Normal
0.0
615
Tumor
0.0
756
Normal
0.0
665
Tumor
0.0
647
Tumor
0.0
422
Normal
0.0
132
Normal
0.0
171
Tumor
0.0
662
Normal
0.0
196
Normal
0.0
137
Tumor
0.0
851
Tumor
-0.1
937
Tumor
-0.1
696
Normal
-0.1
434
Normal
-0.1
538
Normal
-0.1
857
Tumor
-0.1
426
Normal
-0.1
414
Normal
-0.1
824
Normal
-0.1
953
Tumor
-0.1
428
Normal
-0.1
375
Tumor
-0.1
383
Tumor
-0.1
147
Tumor
-0.1
125
Tumor
-0.1
145
Tumor
-0.1
664
Normal
-0.1
467
Tumor
-0.1
353
Tumor
-0.1
142
Normal
-0.1
952
Normal
-0.1
786
Normal
-0.1
686
Normal
-0.1
136
Normal
-0.1
716
Normal
-0.1
433
Tumor
-0.1
415
Tumor
-0.1
1031
Tumor
-0.1
412
Normal
-0.1
395
Tumor
-0.2
785
Tumor
-0.2
424
Normal
-0.2
1041
Tumor
-0.2
435
Tumor
-0.2
355
Tumor
-0.2
672
Normal
-0.2
852
Normal
-0.2
951
Tumor
-0.2
537
Tumor
-0.2
983
Tumor
-0.2
444
Normal
-0.2
218
Normal
-0.2
563
Tumor
-0.2
393
Tumor
-0.2
715
Tumor
-0.2
746
Normal
-0.2
138
Normal
-0.2
663
Tumor
-0.2
628
Normal
-0.3
817
Tumor
-0.3
671
Tumor
-0.3
814
Normal
-0.3
553
Tumor
-0.3
527
Tumor
-0.3
413
Tumor
-0.3
431
Tumor
-0.3
1021
Tumor
-0.3
516
Normal
-0.3
146
Normal
-0.3
391
Tumor
-0.3
557
Tumor
-0.3
533
Tumor
-0.3
283
Tumor
-0.3
685
Tumor
-0.3
141
Tumor
-0.3
728
Normal
-0.4
358
Normal
-0.4
813
Tumor
-0.4
513
Tumor
-0.4
191
Tumor
-0.4
721
Tumor
-0.4
567
Tumor
-0.4
661
Tumor
-0.4
344
Normal
-0.4
724
Normal
-0.4
411
Tumor
-0.4
327
Tumor
-0.4
195
Tumor
-0.4
727
Tumor
-0.5
445
Tumor
-0.5
354
Normal
-0.5
943
Tumor
-0.5
573
Tumor
-0.5
285
Tumor
-0.5
342
Normal
-0.5
352
Normal
-0.5
385
Tumor
-0.6
627
Tumor
-0.6
351
Tumor
-0.6
192
Normal
-0.6
666
Normal
-0.7
545
Tumor
-0.7
341
Tumor
-0.7
523
Tumor
-0.8
217
Tumor
-0.8
723
Tumor
-0.9
357
Tumor
-0.9
211
Tumor
-0.9
1025
Tumor
-0.9
1027
Tumor
-0.9
343
Tumor
-1.0
525
Tumor
-1.7
515
Tumor
-1.9
213
Tumor
-5.1
221
Tumor
-10.5
231
Tumor
N/A
232
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
957
Tumor
N/A
958
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
