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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCD3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
85.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
84.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
58.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
48.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCD3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
66.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
55.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
50.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
49.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.2
497
Tumor
1.0
161
Tumor
1.0
865
Tumor
1.0
351
Tumor
0.9
661
Tumor
0.8
473
Tumor
0.8
297
Tumor
0.7
313
Tumor
0.7
1031
Tumor
0.7
343
Tumor
0.7
921
Tumor
0.7
487
Tumor
0.6
283
Tumor
0.6
965
Tumor
0.6
171
Tumor
0.6
567
Tumor
0.6
1021
Tumor
0.6
211
Tumor
0.5
491
Tumor
0.5
447
Tumor
0.5
285
Tumor
0.5
112
Tumor
0.5
341
Tumor
0.5
221
Tumor
0.5
951
Tumor
0.5
123
Tumor
0.5
331
Tumor
0.5
861
Tumor
0.5
671
Tumor
0.5
573
Tumor
0.5
311
Tumor
0.4
231
Tumor
0.4
277
Tumor
0.4
877
Tumor
0.4
813
Tumor
0.4
983
Tumor
0.4
571
Tumor
0.4
721
Tumor
0.4
433
Tumor
0.4
367
Tumor
0.4
817
Tumor
0.4
387
Tumor
0.4
536
Normal
0.4
815
Tumor
0.4
777
Tumor
0.4
917
Tumor
0.4
271
Tumor
0.4
425
Tumor
0.4
127
Tumor
0.4
663
Tumor
0.4
431
Tumor
0.4
916
Normal
0.4
185
Tumor
0.3
535
Tumor
0.3
641
Tumor
0.3
1013
Tumor
0.3
213
Tumor
0.3
977
Tumor
0.3
192
Normal
0.3
141
Tumor
0.3
923
Tumor
0.3
937
Tumor
0.3
1041
Tumor
0.3
391
Tumor
0.3
463
Tumor
0.3
272
Normal
0.3
195
Tumor
0.3
863
Tumor
0.3
647
Tumor
0.3
483
Tumor
0.3
915
Tumor
0.3
146
Normal
0.3
357
Tumor
0.3
737
Tumor
0.3
1025
Tumor
0.3
727
Tumor
0.3
493
Tumor
0.3
943
Tumor
0.2
384
Normal
0.2
445
Tumor
0.2
145
Tumor
0.2
427
Tumor
0.2
217
Tumor
0.2
685
Tumor
0.2
695
Tumor
0.2
385
Tumor
0.2
131
Tumor
0.2
125
Tumor
0.2
383
Tumor
0.2
713
Tumor
0.2
545
Tumor
0.2
218
Normal
0.2
267
Tumor
0.2
785
Tumor
0.2
492
Normal
0.2
686
Normal
0.2
126
Normal
0.2
814
Normal
0.2
925
Tumor
0.2
1043
Tumor
0.2
188
Normal
0.2
355
Tumor
0.1
741
Tumor
0.1
147
Tumor
0.1
461
Tumor
0.1
635
Tumor
0.1
867
Tumor
0.1
881
Tumor
0.1
724
Normal
0.1
361
Tumor
0.1
697
Tumor
0.1
823
Tumor
0.1
478
Normal
0.1
435
Tumor
0.1
953
Tumor
0.1
443
Tumor
0.1
744
Normal
0.1
395
Tumor
0.1
298
Normal
0.1
124
Normal
0.1
563
Tumor
0.1
533
Tumor
0.1
574
Normal
0.1
444
Normal
0.1
113
Tumor
0.1
862
Normal
0.1
138
Normal
0.1
957
Tumor
0.1
227
Tumor
0.1
375
Tumor
0.1
232
Normal
0.1
448
Normal
0.1
1032
Normal
0.1
191
Tumor
0.1
924
Normal
0.0
344
Normal
0.0
722
Normal
0.0
1015
Tumor
0.0
222
Normal
0.0
413
Tumor
0.0
976
Normal
0.0
498
Normal
0.0
665
Tumor
0.0
451
Tumor
0.0
223
Tumor
0.0
975
Tumor
0.0
527
Tumor
0.0
967
Tumor
0.0
468
Normal
0.0
135
Tumor
0.0
312
Normal
0.0
376
Normal
0.0
648
Normal
0.0
415
Tumor
0.0
964
Normal
0.0
922
Normal
0.0
723
Tumor
0.0
664
Normal
0.0
857
Tumor
0.0
332
Normal
0.0
114
Normal
0.0
421
Tumor
0.0
262
Normal
0.0
913
Tumor
0.0
136
Normal
0.0
214
Normal
0.0
362
Normal
0.0
963
Tumor
0.0
434
Normal
0.0
978
Normal
0.0
558
Normal
0.0
455
Tumor
0.0
111
Normal
0.0
824
Normal
0.0
414
Normal
0.0
557
Tumor
0.0
366
Normal
0.0
528
Normal
0.0
452
Normal
0.0
954
Normal
0.0
411
Tumor
0.0
465
Tumor
0.0
368
Normal
0.0
534
Normal
0.0
423
Tumor
0.0
261
Tumor
0.0
1022
Normal
0.0
456
Normal
0.0
466
Normal
-0.1
537
Tumor
-0.1
852
Normal
-0.1
938
Normal
-0.1
666
Normal
-0.1
187
Tumor
-0.1
1028
Normal
-0.1
477
Tumor
-0.1
365
Tumor
-0.1
471
Tumor
-0.1
224
Normal
-0.1
212
Normal
-0.1
728
Normal
-0.1
553
Tumor
-0.1
148
Normal
-0.1
911
Tumor
-0.1
1046
Normal
-0.1
883
Tumor
-0.1
386
Normal
-0.1
742
Normal
-0.1
352
Normal
-0.1
464
Normal
-0.1
257
Tumor
-0.1
912
Normal
-0.1
698
Normal
-0.1
524
Normal
-0.1
467
Tumor
-0.1
432
Normal
-0.1
196
Normal
-0.1
944
Normal
-0.1
1044
Normal
-0.1
958
Normal
-0.1
873
Tumor
-0.1
866
Normal
-0.1
137
Tumor
-0.1
926
Normal
-0.1
446
Normal
-0.1
554
Normal
-0.1
363
Tumor
-0.1
738
Normal
-0.1
284
Normal
-0.1
568
Normal
-0.1
314
Normal
-0.1
982
Normal
-0.1
546
Normal
-0.1
672
Normal
-0.1
396
Normal
-0.1
428
Normal
-0.1
1016
Normal
-0.1
488
Normal
-0.2
392
Normal
-0.2
956
Normal
-0.2
142
Normal
-0.2
1026
Normal
-0.2
662
Normal
-0.2
572
Normal
-0.2
358
Normal
-0.2
716
Normal
-0.2
981
Tumor
-0.2
513
Tumor
-0.2
436
Normal
-0.2
412
Normal
-0.2
354
Normal
-0.2
538
Normal
-0.2
1027
Tumor
-0.2
984
Normal
-0.2
426
Normal
-0.2
1014
Normal
-0.2
228
Normal
-0.2
755
Tumor
-0.2
564
Normal
-0.2
714
Normal
-0.2
816
Normal
-0.2
715
Tumor
-0.2
484
Normal
-0.2
132
Normal
-0.2
966
Normal
-0.2
394
Normal
-0.2
353
Tumor
-0.2
778
Normal
-0.2
914
Normal
-0.2
128
Normal
-0.2
342
Normal
-0.2
162
Normal
-0.2
516
Normal
-0.2
422
Normal
-0.2
756
Normal
-0.2
874
Normal
-0.2
517
Tumor
-0.2
388
Normal
-0.2
268
Normal
-0.2
523
Tumor
-0.2
1045
Tumor
-0.2
615
Tumor
-0.3
968
Normal
-0.3
474
Normal
-0.3
818
Normal
-0.3
364
Normal
-0.3
696
Normal
-0.3
952
Normal
-0.3
918
Normal
-0.3
286
Normal
-0.3
786
Normal
-0.3
481
Tumor
-0.3
745
Tumor
-0.3
864
Normal
-0.3
746
Normal
-0.3
858
Normal
-0.3
186
Normal
-0.3
278
Normal
-0.3
328
Normal
-0.3
518
Normal
-0.3
851
Tumor
-0.4
617
Tumor
-0.4
955
Tumor
-0.4
868
Normal
-0.4
1042
Normal
-0.4
482
Normal
-0.4
424
Normal
-0.4
172
Normal
-0.4
472
Normal
-0.4
616
Normal
-0.4
884
Normal
-0.4
525
Tumor
-0.4
515
Tumor
-0.4
393
Tumor
-0.4
628
Normal
-0.4
356
Normal
-0.4
416
Normal
-0.5
494
Normal
-0.5
878
Normal
-0.5
462
Normal
-0.5
258
Normal
-0.5
882
Normal
-0.5
327
Tumor
-0.5
627
Tumor
-0.5
526
Normal
-0.6
636
Normal
-0.6
642
Normal
-0.7
618
Normal
-0.7
514
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
