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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPB11 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
124.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
122.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
117.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
112.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
109.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
98.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
90.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
89.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
86.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
86.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
82.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
81.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
80.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
79.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
79.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
79.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
77.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
75.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
75.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
74.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
74.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
73.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
72.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
72.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
71.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
70.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
70.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
69.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
68.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
68.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
67.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
67.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
66.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
65.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
65.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
65.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
65.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
64.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
63.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
61.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
61.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
61.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
61.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
58.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
58.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
57.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
57.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
56.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
56.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
55.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
55.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
54.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
54.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
53.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
53.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
53.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
52.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
52.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
52.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
51.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
51.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
51.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
50.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
50.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
50.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
50.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
50.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
49.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
49.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
49.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
49.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
49.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
48.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
48.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
47.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
47.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
47.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
47.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
47.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
46.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
45.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
45.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
44.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
44.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
44.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
43.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
43.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
43.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
43.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
43.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
42.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
42.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
42.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
42.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
42.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
41.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
41.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
41.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
41.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
40.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
40.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
40.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
40.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
40.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
39.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
39.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
39.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
38.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
38.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
38.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
38.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
37.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
37.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
36.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
36.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
36.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
36.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
35.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
35.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
34.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
33.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
32.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
32.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
32.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
31.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
30.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
29.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
29.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
28.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
27.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
27.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
25.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
25.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPB11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.0
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
207.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
98.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
98.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
89.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
82.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
81.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
78.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
78.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
75.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
75.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
69.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
69.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
66.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
66.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
64.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
63.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
63.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
62.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
61.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
61.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
59.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
59.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
59.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
59.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
58.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
58.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
57.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
56.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
56.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
56.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
55.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
55.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
52.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
51.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
51.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
50.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
50.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
48.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
48.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
48.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
47.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
46.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
46.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
45.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
45.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
43.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
43.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
43.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
40.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
40.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
39.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
39.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
39.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
39.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
38.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
38.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
38.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
37.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
37.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
37.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
35.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
35.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
35.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
34.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
32.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.5
487
Tumor
0.8
663
Tumor
0.8
965
Tumor
0.7
647
Tumor
0.7
745
Tumor
0.6
865
Tumor
0.6
777
Tumor
0.6
537
Tumor
0.6
695
Tumor
0.6
313
Tumor
0.6
862
Normal
0.5
977
Tumor
0.5
911
Tumor
0.5
863
Tumor
0.5
493
Tumor
0.5
465
Tumor
0.5
1013
Tumor
0.5
665
Tumor
0.5
425
Tumor
0.5
571
Tumor
0.5
981
Tumor
0.4
125
Tumor
0.4
737
Tumor
0.4
355
Tumor
0.4
923
Tumor
0.4
112
Tumor
0.4
523
Tumor
0.4
393
Tumor
0.4
1021
Tumor
0.4
161
Tumor
0.4
341
Tumor
0.4
724
Normal
0.4
484
Normal
0.4
915
Tumor
0.4
958
Normal
0.4
943
Tumor
0.3
755
Tumor
0.3
1015
Tumor
0.3
283
Tumor
0.3
481
Tumor
0.3
1027
Tumor
0.3
617
Tumor
0.3
685
Tumor
0.3
727
Tumor
0.3
497
Tumor
0.3
491
Tumor
0.3
1022
Normal
0.3
477
Tumor
0.3
488
Normal
0.3
868
Normal
0.3
698
Normal
0.3
924
Normal
0.3
966
Normal
0.3
978
Normal
0.3
127
Tumor
0.3
953
Tumor
0.3
922
Normal
0.3
968
Normal
0.3
1046
Normal
0.2
714
Normal
0.2
463
Tumor
0.2
967
Tumor
0.2
128
Normal
0.2
1043
Tumor
0.2
723
Tumor
0.2
515
Tumor
0.2
483
Tumor
0.2
954
Normal
0.2
916
Normal
0.2
411
Tumor
0.2
432
Normal
0.2
123
Tumor
0.2
448
Normal
0.2
451
Tumor
0.1
938
Normal
0.1
262
Normal
0.1
756
Normal
0.1
461
Tumor
0.1
114
Normal
0.1
913
Tumor
0.1
716
Normal
0.1
926
Normal
0.1
387
Tumor
0.1
428
Normal
0.1
258
Normal
0.1
545
Tumor
0.1
867
Tumor
0.1
858
Normal
0.1
534
Normal
0.1
738
Normal
0.1
952
Normal
0.1
1044
Normal
0.1
436
Normal
0.1
917
Tumor
0.1
618
Normal
0.1
741
Tumor
0.1
357
Tumor
0.1
211
Tumor
0.1
1025
Tumor
0.1
818
Normal
0.1
456
Normal
0.1
223
Tumor
0.1
126
Normal
0.1
261
Tumor
0.1
111
Normal
0.1
171
Tumor
0.1
964
Normal
0.1
1041
Tumor
0.1
364
Normal
0.1
124
Normal
0.1
277
Tumor
0.1
944
Normal
0.1
1016
Normal
0.1
864
Normal
0.1
443
Tumor
0.1
363
Tumor
0.1
742
Normal
0.1
616
Normal
0.1
113
Tumor
0.1
976
Normal
0.1
918
Normal
0.1
914
Normal
0.0
426
Normal
0.0
431
Tumor
0.0
852
Normal
0.0
874
Normal
0.0
746
Normal
0.0
467
Tumor
0.0
785
Tumor
0.0
982
Normal
0.0
494
Normal
0.0
141
Tumor
0.0
482
Normal
0.0
554
Normal
0.0
1031
Tumor
0.0
361
Tumor
0.0
286
Normal
0.0
778
Normal
0.0
573
Tumor
0.0
1026
Normal
0.0
435
Tumor
0.0
877
Tumor
0.0
298
Normal
0.0
145
Tumor
0.0
873
Tumor
0.0
518
Normal
0.0
391
Tumor
0.0
353
Tumor
0.0
615
Tumor
0.0
272
Normal
0.0
951
Tumor
0.0
713
Tumor
0.0
567
Tumor
0.0
642
Normal
0.0
415
Tumor
0.0
232
Normal
0.0
132
Normal
0.0
147
Tumor
0.0
743
Tumor
0.0
445
Tumor
0.0
636
Normal
0.0
824
Normal
0.0
311
Tumor
0.0
984
Normal
-0.1
866
Normal
-0.1
912
Normal
-0.1
462
Normal
-0.1
525
Tumor
-0.1
628
Normal
-0.1
744
Normal
-0.1
284
Normal
-0.1
956
Normal
-0.1
257
Tumor
-0.1
861
Tumor
-0.1
878
Normal
-0.1
1014
Normal
-0.1
375
Tumor
-0.1
857
Tumor
-0.1
365
Tumor
-0.1
666
Normal
-0.1
816
Normal
-0.1
492
Normal
-0.1
884
Normal
-0.1
1045
Tumor
-0.1
452
Normal
-0.1
314
Normal
-0.1
513
Tumor
-0.1
648
Normal
-0.1
921
Tumor
-0.1
416
Normal
-0.1
823
Tumor
-0.1
412
Normal
-0.1
434
Normal
-0.1
191
Tumor
-0.1
664
Normal
-0.1
218
Normal
-0.1
696
Normal
-0.1
186
Normal
-0.1
955
Tumor
-0.1
228
Normal
-0.1
925
Tumor
-0.1
535
Tumor
-0.1
212
Normal
-0.1
267
Tumor
-0.1
136
Normal
-0.1
527
Tumor
-0.1
366
Normal
-0.1
446
Normal
-0.1
433
Tumor
-0.1
466
Normal
-0.2
192
Normal
-0.2
728
Normal
-0.2
356
Normal
-0.2
187
Tumor
-0.2
422
Normal
-0.2
516
Normal
-0.2
444
Normal
-0.2
715
Tumor
-0.2
146
Normal
-0.2
662
Normal
-0.2
138
Normal
-0.2
362
Normal
-0.2
533
Tumor
-0.2
568
Normal
-0.2
1042
Normal
-0.2
464
Normal
-0.2
1028
Normal
-0.2
851
Tumor
-0.2
528
Normal
-0.2
328
Normal
-0.2
546
Normal
-0.2
817
Tumor
-0.2
517
Tumor
-0.2
563
Tumor
-0.2
172
Normal
-0.2
231
Tumor
-0.2
424
Normal
-0.2
721
Tumor
-0.2
222
Normal
-0.2
162
Normal
-0.2
394
Normal
-0.2
526
Normal
-0.2
185
Tumor
-0.2
214
Normal
-0.2
414
Normal
-0.2
468
Normal
-0.2
268
Normal
-0.2
447
Tumor
-0.2
514
Normal
-0.2
386
Normal
-0.2
131
Tumor
-0.2
882
Normal
-0.2
358
Normal
-0.2
564
Normal
-0.2
786
Normal
-0.2
983
Tumor
-0.2
472
Normal
-0.2
383
Tumor
-0.3
474
Normal
-0.3
142
Normal
-0.3
963
Tumor
-0.3
213
Tumor
-0.3
224
Normal
-0.3
686
Normal
-0.3
697
Tumor
-0.3
343
Tumor
-0.3
351
Tumor
-0.3
478
Normal
-0.3
1032
Normal
-0.3
137
Tumor
-0.3
196
Normal
-0.3
641
Tumor
-0.3
572
Normal
-0.3
883
Tumor
-0.3
635
Tumor
-0.3
342
Normal
-0.3
937
Tumor
-0.3
148
Normal
-0.3
536
Normal
-0.3
354
Normal
-0.3
392
Normal
-0.3
388
Normal
-0.3
423
Tumor
-0.3
722
Normal
-0.3
217
Tumor
-0.3
396
Normal
-0.3
195
Tumor
-0.3
813
Tumor
-0.3
524
Normal
-0.3
368
Normal
-0.4
221
Tumor
-0.4
574
Normal
-0.4
188
Normal
-0.4
376
Normal
-0.4
975
Tumor
-0.4
427
Tumor
-0.4
271
Tumor
-0.4
558
Normal
-0.4
227
Tumor
-0.4
627
Tumor
-0.4
312
Normal
-0.4
384
Normal
-0.4
413
Tumor
-0.4
285
Tumor
-0.5
815
Tumor
-0.5
327
Tumor
-0.5
498
Normal
-0.5
421
Tumor
-0.5
671
Tumor
-0.5
881
Tumor
-0.5
455
Tumor
-0.5
471
Tumor
-0.5
672
Normal
-0.6
557
Tumor
-0.6
473
Tumor
-0.6
814
Normal
-0.6
367
Tumor
-0.6
331
Tumor
-0.6
344
Normal
-0.6
135
Tumor
-0.6
661
Tumor
-0.6
352
Normal
-0.6
395
Tumor
-0.6
297
Tumor
-0.7
332
Normal
-0.7
538
Normal
-0.9
385
Tumor
-0.9
278
Normal
-0.9
553
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
