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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
JMJD4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
33.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
JMJD4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.4
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
913
Tumor
1.0
573
Tumor
1.0
564
Normal
1.0
443
Tumor
1.0
445
Tumor
1.0
147
Tumor
0.9
567
Tumor
0.9
877
Tumor
0.8
431
Tumor
0.8
428
Normal
0.7
574
Normal
0.7
558
Normal
0.7
432
Normal
0.7
424
Normal
0.7
196
Normal
0.7
222
Normal
0.7
571
Tumor
0.7
422
Normal
0.7
446
Normal
0.6
413
Tumor
0.6
557
Tumor
0.6
568
Normal
0.6
186
Normal
0.6
187
Tumor
0.6
414
Normal
0.6
148
Normal
0.6
391
Tumor
0.6
572
Normal
0.6
444
Normal
0.6
435
Tumor
0.6
563
Tumor
0.5
188
Normal
0.5
283
Tumor
0.5
195
Tumor
0.5
171
Tumor
0.5
722
Normal
0.5
1045
Tumor
0.5
162
Normal
0.5
665
Tumor
0.5
218
Normal
0.5
648
Normal
0.5
426
Normal
0.5
433
Tumor
0.5
716
Normal
0.4
421
Tumor
0.4
172
Normal
0.4
671
Tumor
0.4
436
Normal
0.4
714
Normal
0.4
914
Normal
0.4
393
Tumor
0.4
697
Tumor
0.4
285
Tumor
0.4
427
Tumor
0.4
851
Tumor
0.4
423
Tumor
0.4
956
Normal
0.4
191
Tumor
0.3
385
Tumor
0.3
965
Tumor
0.3
1021
Tumor
0.3
881
Tumor
0.3
214
Normal
0.3
666
Normal
0.3
395
Tumor
0.3
217
Tumor
0.3
533
Tumor
0.3
857
Tumor
0.3
955
Tumor
0.3
434
Normal
0.3
868
Normal
0.3
258
Normal
0.3
617
Tumor
0.3
297
Tumor
0.3
185
Tumor
0.3
635
Tumor
0.2
858
Normal
0.2
672
Normal
0.2
912
Normal
0.2
525
Tumor
0.2
386
Normal
0.2
865
Tumor
0.2
227
Tumor
0.2
388
Normal
0.2
818
Normal
0.2
953
Tumor
0.2
878
Normal
0.2
938
Normal
0.2
271
Tumor
0.2
394
Normal
0.2
952
Normal
0.2
517
Tumor
0.2
192
Normal
0.2
937
Tumor
0.2
1025
Tumor
0.2
553
Tumor
0.2
481
Tumor
0.1
662
Normal
0.1
664
Normal
0.1
713
Tumor
0.1
221
Tumor
0.1
1027
Tumor
0.1
268
Normal
0.1
514
Normal
0.1
686
Normal
0.1
1043
Tumor
0.1
272
Normal
0.1
224
Normal
0.1
944
Normal
0.1
647
Tumor
0.1
213
Tumor
0.1
1031
Tumor
0.1
863
Tumor
0.1
528
Normal
0.1
284
Normal
0.1
396
Normal
0.1
526
Normal
0.1
518
Normal
0.0
228
Normal
0.0
884
Normal
0.0
535
Tumor
0.0
663
Tumor
0.0
311
Tumor
0.0
911
Tumor
0.0
661
Tumor
0.0
756
Normal
0.0
883
Tumor
0.0
728
Normal
0.0
727
Tumor
0.0
513
Tumor
0.0
724
Normal
0.0
527
Tumor
0.0
387
Tumor
0.0
742
Normal
0.0
975
Tumor
0.0
814
Normal
0.0
232
Normal
0.0
262
Normal
0.0
211
Tumor
0.0
852
Normal
0.0
392
Normal
0.0
277
Tumor
0.0
312
Normal
0.0
815
Tumor
-0.1
1046
Normal
-0.1
223
Tumor
-0.1
951
Tumor
-0.1
943
Tumor
-0.1
685
Tumor
-0.1
866
Normal
-0.1
723
Tumor
-0.1
964
Normal
-0.1
536
Normal
-0.1
482
Normal
-0.1
882
Normal
-0.1
534
Normal
-0.1
696
Normal
-0.1
721
Tumor
-0.1
816
Normal
-0.1
498
Normal
-0.1
862
Normal
-0.1
954
Normal
-0.1
425
Tumor
-0.2
867
Tumor
-0.2
484
Normal
-0.2
817
Tumor
-0.2
744
Normal
-0.2
968
Normal
-0.2
161
Tumor
-0.2
786
Normal
-0.2
741
Tumor
-0.2
698
Normal
-0.2
488
Normal
-0.2
1041
Tumor
-0.2
963
Tumor
-0.2
641
Tumor
-0.2
738
Normal
-0.2
1044
Normal
-0.2
627
Tumor
-0.3
447
Tumor
-0.3
472
Normal
-0.3
966
Normal
-0.3
448
Normal
-0.3
313
Tumor
-0.3
737
Tumor
-0.3
755
Tumor
-0.3
278
Normal
-0.3
745
Tumor
-0.3
746
Normal
-0.3
636
Normal
-0.3
494
Normal
-0.3
874
Normal
-0.3
1028
Normal
-0.4
967
Tumor
-0.4
813
Tumor
-0.4
777
Tumor
-0.4
537
Tumor
-0.4
976
Normal
-0.4
824
Normal
-0.4
261
Tumor
-0.4
861
Tumor
-0.4
873
Tumor
-0.4
267
Tumor
-0.4
1042
Normal
-0.4
778
Normal
-0.4
523
Tumor
-0.4
743
Tumor
-0.4
616
Normal
-0.4
524
Normal
-0.5
474
Normal
-0.5
516
Normal
-0.5
471
Tumor
-0.5
785
Tumor
-0.5
1022
Normal
-0.5
212
Normal
-0.5
695
Tumor
-0.5
715
Tumor
-0.5
487
Tumor
-0.5
298
Normal
-0.5
957
Tumor
-0.5
1032
Normal
-0.5
314
Normal
-0.5
823
Tumor
-0.6
546
Normal
-0.6
615
Tumor
-0.6
478
Normal
-0.6
618
Normal
-0.6
257
Tumor
-0.6
642
Normal
-0.6
864
Normal
-0.6
1026
Normal
-0.7
286
Normal
-0.7
331
Tumor
-0.7
554
Normal
-0.7
628
Normal
-0.7
231
Tumor
-0.7
958
Normal
-0.7
515
Tumor
-0.7
462
Normal
-0.8
538
Normal
-0.8
332
Normal
-0.8
492
Normal
-0.9
493
Tumor
-0.9
545
Tumor
-0.9
491
Tumor
-1.0
483
Tumor
-1.1
461
Tumor
-1.2
477
Tumor
-1.2
497
Tumor
-1.3
473
Tumor
-1.6
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
