MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA Brain:9.8 nTPM
GTEx:7.2 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:5.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 9.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.7
2586 Male, age 75, left hemisphere 13.0
2828 Female, age 72, unknown 8.9
1827 Male, age 72, unknown 8.7
2411 Female, age 72, unknown 7.9
2019 Male, age 18, unknown 7.6
2219 Male, age 76, both hemispheres 7.0
2666 Male, age 74, left hemisphere 6.6
1830 Male, age 51, unknown 5.9
1870 Female, age 42, unknown 5.9
1833 Male, age 53, unknown 5.3
Dorsal raphe nucleus
nTPM: 7.6
2298 Female, age 72, unknown 9.1
2047 Male, age 72, unknown 7.9
2750 Male, age 76, both hemispheres 7.8
2016 Female, age 72, unknown 6.7
1828 Male, age 53, unknown 6.5
Inferior colliculus
nTPM: 5.2
1890 Male, age 53, unknown 5.8
2097 Female, age 72, unknown 5.5
1848 Female, age 42, unknown 5.1
2849 Male, age 72, unknown 4.3
Median raphe nucleus
nTPM: 7.5
2220 Male, age 76, midline 7.5
Periaquaductal grey, anterior
nTPM: 8.6
2502 Female, age 75, unknown 9.8
1795 Male, age 51, unknown 9.0
1947 Male, age 18, unknown 7.1
Periaquaductal grey, dorsal
nTPM: 6.1
1840 Male, age 53, unknown 6.4
2464 Female, age 72, unknown 6.2
1831 Male, age 72, unknown 5.9
2850 Male, age 76, both hemispheres 5.7
Periaquaductal grey, lateral
nTPM: 5.9
2053 Male, age 18, unknown 6.2
2140 Male, age 76, both hemispheres 6.2
2272 Male, age 74, both hemispheres 5.3
Pretectal area
nTPM: 7.2
1816 Male, age 51, unknown 9.1
2007 Male, age 72, unknown 9.1
1815 Male, age 53, unknown 8.7
1817 Female, age 42, unknown 7.8
1944 Female, age 72, unknown 7.6
2667 Female, age 75, unknown 7.2
2224 Female, age 72, unknown 6.4
2273 Male, age 74, both hemispheres 6.4
2407 Male, age 75, both hemispheres 6.0
2825 Male, age 18, unknown 6.0
2316 Male, age 76, right hemisphere 5.3
Red nucleus
nTPM: 7.1
2584 Male, age 75, left hemisphere 9.3
2785 Male, age 18, unknown 8.1
2588 Male, age 74, left hemisphere 8.0
1904 Male, age 53, unknown 7.5
1821 Female, age 72, unknown 7.3
1865 Male, age 51, unknown 7.3
2227 Male, age 72, unknown 7.0
1954 Female, age 42, unknown 6.9
2769 Male, age 72, unknown 6.6
2503 Female, age 72, unknown 6.3
2725 Female, age 75, unknown 6.2
2823 Male, age 76, right hemisphere 5.0
Substantia nigra
nTPM: 9.8
1916 Female, age 42, unknown 14.0
1851 Male, age 51, unknown 12.6
2665 Male, age 74, both hemispheres 10.2
1941 Male, age 53, unknown 9.6
2583 Male, age 75, right hemisphere 9.6
2699 Male, age 18, unknown 9.3
1889 Female, age 72, unknown 8.5
2409 Female, age 72, unknown 8.4
2241 Male, age 72, unknown 8.2
2590 Female, age 75, unknown 8.0
Superior colliculus
nTPM: 7.2
2664 Male, age 75, both hemispheres 8.9
1796 Male, age 53, unknown 8.8
2261 Male, age 18, unknown 8.7
2668 Female, age 75, unknown 8.5
2087 Female, age 72, unknown 8.0
1995 Male, age 72, unknown 6.9
2587 Male, age 74, left hemisphere 6.1
1913 Female, age 42, unknown 5.9
1839 Male, age 51, unknown 5.3
1895 Male, age 76, right hemisphere 5.2
Ventral tegmental area
nTPM: 9.0
2410 Female, age 72, unknown 11.0
1915 Female, age 42, unknown 10.8
2218 Male, age 76, both hemispheres 9.4
1942 Male, age 51, unknown 8.2
2021 Male, age 53, unknown 7.7
2223 Female, age 72, unknown 6.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.2
Samples: 139

Max nTPM: 17.3
Min nTPM: 0.0
Std nTPM: 2.7
Median nTPM: 6.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 17.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 15.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 13.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 13.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 13.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 12.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 11.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 11.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 11.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 11.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 11.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.7
FF:10158-103A5 76 years, female 7.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.8
Samples: 4

Max nTPM: 16.2
Min nTPM: 15.0
Sample A Female 15.9
Sample B Female 15.0
Sample C Male 16.0
Sample D Male 16.2
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 18.7
Min nTPM: 14.4
Sample A Female 18.7
Sample B Female 14.4
Sample C Male 16.8
Sample D Male 15.2
Periaqueductal gray
nTPM: 13.7
Samples: 3

Max nTPM: 14.3
Min nTPM: 13.2
Sample B Female 13.5
Sample C Male 14.3
Sample D Male 13.2
Superior colliculi
nTPM: 16.5
Samples: 4

Max nTPM: 17.2
Min nTPM: 15.7
Sample A Female 17.2
Sample B Female 15.7
Sample C Male 16.5
Sample D Male 16.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.1
Sample A Male 5.1
Sample B Male 5.4
Sample C Female 5.2
Sample D Female 6.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69288662 Antisense, RP_050407_01_E01, Mouse strain C57BL/6J (56 days, male) 0.0

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