MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.5 nTPM
HPA Brain:27.9 nTPM
GTEx:5.5 nTPM
FANTOM5:95.8 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.2
1830 Male, age 51, unknown 33.6
1833 Male, age 53, unknown 32.8
1870 Female, age 42, unknown 29.8
2828 Female, age 72, unknown 26.8
2219 Male, age 76, both hemispheres 26.5
2666 Male, age 74, left hemisphere 24.4
1827 Male, age 72, unknown 24.2
2019 Male, age 18, unknown 23.9
2411 Female, age 72, unknown 23.4
2586 Male, age 75, left hemisphere 16.8
Dorsal raphe nucleus
nTPM: 23.2
2750 Male, age 76, both hemispheres 30.2
2016 Female, age 72, unknown 25.1
1828 Male, age 53, unknown 21.3
2047 Male, age 72, unknown 20.9
2298 Female, age 72, unknown 18.8
Inferior colliculus
nTPM: 25.5
2849 Male, age 72, unknown 27.1
1890 Male, age 53, unknown 25.6
1848 Female, age 42, unknown 24.8
2097 Female, age 72, unknown 24.7
Median raphe nucleus
nTPM: 21.4
2220 Male, age 76, midline 21.4
Periaquaductal grey, anterior
nTPM: 23.8
1947 Male, age 18, unknown 25.8
2502 Female, age 75, unknown 25.6
1795 Male, age 51, unknown 19.9
Periaquaductal grey, dorsal
nTPM: 25.1
2464 Female, age 72, unknown 26.8
1831 Male, age 72, unknown 26.5
2850 Male, age 76, both hemispheres 25.5
1840 Male, age 53, unknown 21.7
Periaquaductal grey, lateral
nTPM: 25.1
2272 Male, age 74, both hemispheres 29.4
2053 Male, age 18, unknown 25.4
2140 Male, age 76, both hemispheres 20.6
Pretectal area
nTPM: 24.9
2316 Male, age 76, right hemisphere 32.5
2667 Female, age 75, unknown 29.0
2407 Male, age 75, both hemispheres 28.3
2224 Female, age 72, unknown 26.4
1815 Male, age 53, unknown 25.8
2825 Male, age 18, unknown 25.6
2273 Male, age 74, both hemispheres 22.2
1944 Female, age 72, unknown 22.0
1817 Female, age 42, unknown 21.7
1816 Male, age 51, unknown 20.6
2007 Male, age 72, unknown 20.2
Red nucleus
nTPM: 27.9
2823 Male, age 76, right hemisphere 41.8
1904 Male, age 53, unknown 32.2
1954 Female, age 42, unknown 29.6
1865 Male, age 51, unknown 28.9
2503 Female, age 72, unknown 27.0
1821 Female, age 72, unknown 26.8
2769 Male, age 72, unknown 26.1
2227 Male, age 72, unknown 25.9
2584 Male, age 75, left hemisphere 25.4
2785 Male, age 18, unknown 24.9
2588 Male, age 74, left hemisphere 23.6
2725 Female, age 75, unknown 22.9
Substantia nigra
nTPM: 25.4
2241 Male, age 72, unknown 35.2
2665 Male, age 74, both hemispheres 29.6
2699 Male, age 18, unknown 26.2
2583 Male, age 75, right hemisphere 25.6
1851 Male, age 51, unknown 25.2
1889 Female, age 72, unknown 23.8
1941 Male, age 53, unknown 23.5
2590 Female, age 75, unknown 23.0
2409 Female, age 72, unknown 22.1
1916 Female, age 42, unknown 19.7
Superior colliculus
nTPM: 25.6
1895 Male, age 76, right hemisphere 31.8
1913 Female, age 42, unknown 28.7
2087 Female, age 72, unknown 27.3
1839 Male, age 51, unknown 26.4
2668 Female, age 75, unknown 26.1
1995 Male, age 72, unknown 25.9
2261 Male, age 18, unknown 25.1
2664 Male, age 75, both hemispheres 22.2
2587 Male, age 74, left hemisphere 22.1
1796 Male, age 53, unknown 20.5
Ventral tegmental area
nTPM: 23.5
2021 Male, age 53, unknown 24.7
2223 Female, age 72, unknown 23.9
1942 Male, age 51, unknown 23.4
2218 Male, age 76, both hemispheres 23.4
2410 Female, age 72, unknown 23.0
1915 Female, age 42, unknown 22.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.5
Samples: 139

Max nTPM: 16.0
Min nTPM: 1.0
Std nTPM: 3.0
Median nTPM: 5.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 16.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 13.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 13.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 12.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 11.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 11.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 10.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 10.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 10.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 10.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.8
FF:10158-103A5 76 years, female 95.8

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