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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPRC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
126.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
44.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPRC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
103.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
84.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
83.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
78.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
71.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
67.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
62.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
49.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
48.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
42.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.5
724
Normal
1.4
661
Tumor
1.4
917
Tumor
1.3
492
Normal
1.2
434
Normal
1.1
213
Tumor
1.1
311
Tumor
1.0
536
Normal
0.9
823
Tumor
0.9
1031
Tumor
0.9
188
Normal
0.8
966
Normal
0.8
978
Normal
0.8
535
Tumor
0.8
861
Tumor
0.8
524
Normal
0.8
126
Normal
0.8
814
Normal
0.8
943
Tumor
0.8
217
Tumor
0.8
192
Normal
0.7
478
Normal
0.7
262
Normal
0.7
467
Tumor
0.7
444
Normal
0.7
447
Tumor
0.7
385
Tumor
0.6
343
Tumor
0.6
721
Tumor
0.6
185
Tumor
0.6
916
Normal
0.6
491
Tumor
0.6
455
Tumor
0.6
498
Normal
0.6
224
Normal
0.6
383
Tumor
0.5
268
Normal
0.5
471
Tumor
0.5
963
Tumor
0.5
538
Normal
0.5
975
Tumor
0.5
146
Normal
0.5
223
Tumor
0.5
686
Normal
0.5
366
Normal
0.5
914
Normal
0.5
362
Normal
0.5
283
Tumor
0.5
195
Tumor
0.5
125
Tumor
0.5
952
Normal
0.4
141
Tumor
0.4
386
Normal
0.4
212
Normal
0.4
851
Tumor
0.4
272
Normal
0.4
628
Normal
0.4
138
Normal
0.4
1043
Tumor
0.4
493
Tumor
0.4
852
Normal
0.4
976
Normal
0.4
384
Normal
0.4
662
Normal
0.4
312
Normal
0.4
516
Normal
0.3
815
Tumor
0.3
874
Normal
0.3
415
Tumor
0.3
713
Tumor
0.3
956
Normal
0.3
1042
Normal
0.3
375
Tumor
0.3
421
Tumor
0.3
468
Normal
0.3
1044
Normal
0.3
881
Tumor
0.3
1015
Tumor
0.3
191
Tumor
0.3
984
Normal
0.3
574
Normal
0.3
857
Tumor
0.3
954
Normal
0.3
124
Normal
0.3
494
Normal
0.3
563
Tumor
0.3
344
Normal
0.2
867
Tumor
0.2
778
Normal
0.2
114
Normal
0.2
817
Tumor
0.2
716
Normal
0.2
284
Normal
0.2
1028
Normal
0.2
432
Normal
0.2
573
Tumor
0.2
142
Normal
0.2
396
Normal
0.2
456
Normal
0.2
816
Normal
0.2
672
Normal
0.2
391
Tumor
0.2
474
Normal
0.2
187
Tumor
0.2
413
Tumor
0.2
451
Tumor
0.2
355
Tumor
0.1
352
Normal
0.1
968
Normal
0.1
664
Normal
0.1
218
Normal
0.1
461
Tumor
0.1
528
Normal
0.1
666
Normal
0.1
697
Tumor
0.1
1016
Normal
0.1
364
Normal
0.1
738
Normal
0.1
877
Tumor
0.1
332
Normal
0.1
258
Normal
0.1
558
Normal
0.1
363
Tumor
0.1
367
Tumor
0.1
913
Tumor
0.1
671
Tumor
0.1
728
Normal
0.1
136
Normal
0.1
395
Tumor
0.1
368
Normal
0.1
926
Normal
0.1
111
Normal
0.1
983
Tumor
0.1
278
Normal
0.1
518
Normal
0.0
918
Normal
0.0
955
Tumor
0.0
424
Normal
0.0
1026
Normal
0.0
392
Normal
0.0
328
Normal
0.0
813
Tumor
0.0
365
Tumor
0.0
938
Normal
0.0
412
Normal
0.0
514
Normal
0.0
214
Normal
0.0
617
Tumor
0.0
925
Tumor
0.0
1014
Normal
0.0
696
Normal
0.0
297
Tumor
0.0
958
Normal
0.0
387
Tumor
0.0
525
Tumor
0.0
446
Normal
0.0
416
Normal
0.0
488
Normal
0.0
172
Normal
0.0
472
Normal
-0.1
756
Normal
-0.1
858
Normal
-0.1
388
Normal
-0.1
554
Normal
-0.1
883
Tumor
-0.1
394
Normal
-0.1
463
Tumor
-0.1
868
Normal
-0.1
1032
Normal
-0.1
882
Normal
-0.1
866
Normal
-0.1
526
Normal
-0.1
228
Normal
-0.1
744
Normal
-0.1
145
Tumor
-0.1
358
Normal
-0.1
546
Normal
-0.1
135
Tumor
-0.1
722
Normal
-0.1
786
Normal
-0.1
884
Normal
-0.1
864
Normal
-0.1
162
Normal
-0.1
1046
Normal
-0.1
462
Normal
-0.1
356
Normal
-0.1
464
Normal
-0.1
232
Normal
-0.1
298
Normal
-0.2
922
Normal
-0.2
714
Normal
-0.2
137
Tumor
-0.2
924
Normal
-0.2
466
Normal
-0.2
422
Normal
-0.2
818
Normal
-0.2
376
Normal
-0.2
878
Normal
-0.2
354
Normal
-0.2
982
Normal
-0.2
862
Normal
-0.2
534
Normal
-0.2
483
Tumor
-0.2
452
Normal
-0.2
161
Tumor
-0.2
742
Normal
-0.2
286
Normal
-0.2
824
Normal
-0.2
448
Normal
-0.2
132
Normal
-0.2
912
Normal
-0.2
564
Normal
-0.2
414
Normal
-0.2
428
Normal
-0.2
482
Normal
-0.2
723
Tumor
-0.2
715
Tumor
-0.2
755
Tumor
-0.2
545
Tumor
-0.2
648
Normal
-0.2
915
Tumor
-0.2
427
Tumor
-0.3
148
Normal
-0.3
964
Normal
-0.3
698
Normal
-0.3
944
Normal
-0.3
727
Tumor
-0.3
1022
Normal
-0.3
196
Normal
-0.3
277
Tumor
-0.3
342
Normal
-0.3
314
Normal
-0.3
186
Normal
-0.3
616
Normal
-0.3
553
Tumor
-0.3
1045
Tumor
-0.3
641
Tumor
-0.3
128
Normal
-0.3
426
Normal
-0.3
222
Normal
-0.3
951
Tumor
-0.3
665
Tumor
-0.4
685
Tumor
-0.4
636
Normal
-0.4
433
Tumor
-0.4
557
Tumor
-0.4
937
Tumor
-0.4
423
Tumor
-0.4
921
Tumor
-0.4
113
Tumor
-0.4
865
Tumor
-0.4
642
Normal
-0.4
572
Normal
-0.4
568
Normal
-0.4
227
Tumor
-0.4
221
Tumor
-0.4
331
Tumor
-0.4
353
Tumor
-0.4
443
Tumor
-0.4
436
Normal
-0.4
618
Normal
-0.4
785
Tumor
-0.4
484
Normal
-0.4
537
Tumor
-0.5
271
Tumor
-0.5
341
Tumor
-0.5
285
Tumor
-0.5
261
Tumor
-0.5
953
Tumor
-0.5
967
Tumor
-0.5
361
Tumor
-0.5
481
Tumor
-0.5
663
Tumor
-0.5
746
Normal
-0.5
231
Tumor
-0.6
923
Tumor
-0.6
1025
Tumor
-0.6
497
Tumor
-0.6
487
Tumor
-0.6
863
Tumor
-0.6
873
Tumor
-0.6
977
Tumor
-0.7
527
Tumor
-0.7
127
Tumor
-0.7
257
Tumor
-0.7
327
Tumor
-0.8
1041
Tumor
-0.8
571
Tumor
-0.8
351
Tumor
-0.8
267
Tumor
-0.8
131
Tumor
-0.9
517
Tumor
-0.9
431
Tumor
-0.9
627
Tumor
-0.9
515
Tumor
-0.9
1027
Tumor
-0.9
737
Tumor
-0.9
567
Tumor
-0.9
477
Tumor
-0.9
425
Tumor
-0.9
523
Tumor
-1.0
112
Tumor
-1.0
147
Tumor
-1.0
393
Tumor
-1.0
313
Tumor
-1.0
473
Tumor
-1.0
957
Tumor
-1.1
533
Tumor
-1.1
647
Tumor
-1.1
171
Tumor
-1.1
1021
Tumor
-1.1
615
Tumor
-1.1
465
Tumor
-1.1
911
Tumor
-1.1
981
Tumor
-1.1
695
Tumor
-1.1
513
Tumor
-1.1
965
Tumor
-1.2
445
Tumor
-1.2
741
Tumor
-1.2
411
Tumor
-1.2
1013
Tumor
-1.3
123
Tumor
-1.3
777
Tumor
-1.3
745
Tumor
-1.4
357
Tumor
-1.4
635
Tumor
-1.5
435
Tumor
-1.6
743
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
