We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DLGAP4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
83.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
76.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
71.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
71.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
70.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
64.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
63.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
54.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
54.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
52.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
51.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
51.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
51.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
50.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
49.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
48.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
46.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
44.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
39.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
37.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
36.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
35.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
31.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
27.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DLGAP4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.7
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
48.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
45.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
42.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
41.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
39.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
38.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.3
211
Tumor
1.1
671
Tumor
1.0
921
Tumor
1.0
385
Tumor
0.9
525
Tumor
0.9
1013
Tumor
0.9
135
Tumor
0.9
435
Tumor
0.8
965
Tumor
0.8
663
Tumor
0.8
647
Tumor
0.8
533
Tumor
0.8
815
Tumor
0.8
297
Tumor
0.8
737
Tumor
0.8
967
Tumor
0.7
221
Tumor
0.7
745
Tumor
0.7
395
Tumor
0.7
425
Tumor
0.7
537
Tumor
0.6
455
Tumor
0.6
975
Tumor
0.6
283
Tumor
0.6
851
Tumor
0.6
375
Tumor
0.6
545
Tumor
0.6
877
Tumor
0.6
535
Tumor
0.6
881
Tumor
0.6
865
Tumor
0.6
963
Tumor
0.5
923
Tumor
0.5
351
Tumor
0.5
355
Tumor
0.5
497
Tumor
0.5
573
Tumor
0.5
567
Tumor
0.5
913
Tumor
0.5
343
Tumor
0.5
957
Tumor
0.5
937
Tumor
0.5
411
Tumor
0.5
635
Tumor
0.5
817
Tumor
0.5
925
Tumor
0.5
131
Tumor
0.5
465
Tumor
0.5
285
Tumor
0.5
451
Tumor
0.4
363
Tumor
0.4
823
Tumor
0.4
661
Tumor
0.4
917
Tumor
0.4
873
Tumor
0.4
447
Tumor
0.4
483
Tumor
0.4
515
Tumor
0.4
171
Tumor
0.4
227
Tumor
0.4
951
Tumor
0.4
491
Tumor
0.4
123
Tumor
0.4
1025
Tumor
0.4
427
Tumor
0.4
147
Tumor
0.4
1043
Tumor
0.4
311
Tumor
0.3
421
Tumor
0.3
641
Tumor
0.3
471
Tumor
0.3
943
Tumor
0.3
883
Tumor
0.3
1021
Tumor
0.3
861
Tumor
0.3
983
Tumor
0.3
493
Tumor
0.3
695
Tumor
0.3
125
Tumor
0.3
223
Tumor
0.3
331
Tumor
0.3
777
Tumor
0.3
563
Tumor
0.3
443
Tumor
0.3
141
Tumor
0.3
277
Tumor
0.3
365
Tumor
0.3
217
Tumor
0.3
461
Tumor
0.3
513
Tumor
0.3
617
Tumor
0.2
977
Tumor
0.2
517
Tumor
0.2
257
Tumor
0.2
112
Tumor
0.2
713
Tumor
0.2
685
Tumor
0.2
1031
Tumor
0.2
268
Normal
0.2
538
Normal
0.2
527
Tumor
0.2
785
Tumor
0.2
553
Tumor
0.2
145
Tumor
0.2
477
Tumor
0.2
192
Normal
0.2
127
Tumor
0.2
492
Normal
0.2
191
Tumor
0.2
161
Tumor
0.2
953
Tumor
0.2
463
Tumor
0.1
487
Tumor
0.1
1027
Tumor
0.1
697
Tumor
0.1
383
Tumor
0.1
473
Tumor
0.1
341
Tumor
0.1
557
Tumor
0.1
271
Tumor
0.1
185
Tumor
0.1
213
Tumor
0.1
715
Tumor
0.1
721
Tumor
0.1
554
Normal
0.1
755
Tumor
0.1
627
Tumor
0.1
911
Tumor
0.1
313
Tumor
0.1
267
Tumor
0.1
857
Tumor
0.1
536
Normal
0.1
137
Tumor
0.0
814
Normal
0.0
665
Tumor
0.0
813
Tumor
0.0
915
Tumor
0.0
188
Normal
0.0
952
Normal
0.0
187
Tumor
0.0
727
Tumor
0.0
916
Normal
0.0
1015
Tumor
0.0
444
Normal
0.0
571
Tumor
0.0
387
Tumor
0.0
478
Normal
0.0
231
Tumor
0.0
498
Normal
0.0
724
Normal
0.0
976
Normal
0.0
1044
Normal
0.0
195
Tumor
0.0
146
Normal
0.0
966
Normal
0.0
1028
Normal
0.0
445
Tumor
0.0
672
Normal
-0.1
467
Tumor
-0.1
136
Normal
-0.1
628
Normal
-0.1
142
Normal
-0.1
413
Tumor
-0.1
1045
Tumor
-0.1
433
Tumor
-0.1
874
Normal
-0.1
415
Tumor
-0.1
272
Normal
-0.1
212
Normal
-0.1
474
Normal
-0.1
132
Normal
-0.1
431
Tumor
-0.1
518
Normal
-0.1
528
Normal
-0.1
138
Normal
-0.1
327
Tumor
-0.1
878
Normal
-0.1
642
Normal
-0.1
224
Normal
-0.1
361
Tumor
-0.1
863
Tumor
-0.1
516
Normal
-0.1
662
Normal
-0.1
1022
Normal
-0.1
615
Tumor
-0.1
746
Normal
-0.1
918
Normal
-0.1
357
Tumor
-0.1
696
Normal
-0.2
353
Tumor
-0.2
126
Normal
-0.2
312
Normal
-0.2
852
Normal
-0.2
448
Normal
-0.2
981
Tumor
-0.2
955
Tumor
-0.2
868
Normal
-0.2
778
Normal
-0.2
386
Normal
-0.2
741
Tumor
-0.2
262
Normal
-0.2
1042
Normal
-0.2
884
Normal
-0.2
984
Normal
-0.2
393
Tumor
-0.2
261
Tumor
-0.2
1041
Tumor
-0.2
384
Normal
-0.2
982
Normal
-0.2
434
Normal
-0.2
722
Normal
-0.2
113
Tumor
-0.2
524
Normal
-0.2
978
Normal
-0.2
686
Normal
-0.2
284
Normal
-0.2
546
Normal
-0.2
462
Normal
-0.2
218
Normal
-0.2
494
Normal
-0.2
866
Normal
-0.2
228
Normal
-0.2
744
Normal
-0.2
362
Normal
-0.2
968
Normal
-0.2
514
Normal
-0.2
558
Normal
-0.2
882
Normal
-0.2
344
Normal
-0.2
367
Tumor
-0.2
232
Normal
-0.2
468
Normal
-0.2
1016
Normal
-0.2
922
Normal
-0.2
816
Normal
-0.2
258
Normal
-0.2
664
Normal
-0.3
534
Normal
-0.3
298
Normal
-0.3
574
Normal
-0.3
1032
Normal
-0.3
392
Normal
-0.3
472
Normal
-0.3
738
Normal
-0.3
572
Normal
-0.3
1014
Normal
-0.3
124
Normal
-0.3
698
Normal
-0.3
716
Normal
-0.3
636
Normal
-0.3
352
Normal
-0.3
214
Normal
-0.3
332
Normal
-0.3
482
Normal
-0.3
924
Normal
-0.3
1046
Normal
-0.3
568
Normal
-0.3
956
Normal
-0.3
958
Normal
-0.3
618
Normal
-0.3
391
Tumor
-0.3
864
Normal
-0.3
396
Normal
-0.3
424
Normal
-0.3
912
Normal
-0.3
412
Normal
-0.3
728
Normal
-0.3
286
Normal
-0.3
714
Normal
-0.3
278
Normal
-0.3
666
Normal
-0.3
416
Normal
-0.3
616
Normal
-0.3
394
Normal
-0.3
314
Normal
-0.3
1026
Normal
-0.3
742
Normal
-0.3
523
Tumor
-0.3
222
Normal
-0.3
526
Normal
-0.3
481
Tumor
-0.3
723
Tumor
-0.3
196
Normal
-0.3
756
Normal
-0.3
423
Tumor
-0.4
111
Normal
-0.4
944
Normal
-0.4
786
Normal
-0.4
114
Normal
-0.4
926
Normal
-0.4
954
Normal
-0.4
564
Normal
-0.4
368
Normal
-0.4
422
Normal
-0.4
456
Normal
-0.4
366
Normal
-0.4
436
Normal
-0.4
867
Tumor
-0.4
914
Normal
-0.4
488
Normal
-0.4
648
Normal
-0.4
428
Normal
-0.4
938
Normal
-0.4
354
Normal
-0.4
484
Normal
-0.4
358
Normal
-0.4
446
Normal
-0.5
466
Normal
-0.5
128
Normal
-0.5
414
Normal
-0.5
824
Normal
-0.5
862
Normal
-0.5
426
Normal
-0.5
432
Normal
-0.5
148
Normal
-0.5
964
Normal
-0.5
452
Normal
-0.5
388
Normal
-0.5
858
Normal
-0.5
162
Normal
-0.5
342
Normal
-0.5
356
Normal
-0.5
818
Normal
-0.5
376
Normal
-0.6
364
Normal
-0.6
464
Normal
-0.6
186
Normal
-0.6
172
Normal
-0.6
328
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.