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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLDND1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
57.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
56.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
42.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
37.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
32.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLDND1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
232.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
67.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
54.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
47.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
45.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
44.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
41.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
39.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
38.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
0.7
1025
Tumor
0.6
257
Tumor
0.6
343
Tumor
0.6
313
Tumor
0.6
865
Tumor
0.6
271
Tumor
0.5
823
Tumor
0.5
491
Tumor
0.5
967
Tumor
0.5
955
Tumor
0.5
327
Tumor
0.5
954
Normal
0.5
963
Tumor
0.5
968
Normal
0.5
964
Normal
0.5
341
Tumor
0.4
212
Normal
0.4
498
Normal
0.4
976
Normal
0.4
953
Tumor
0.4
977
Tumor
0.4
527
Tumor
0.4
1027
Tumor
0.4
524
Normal
0.4
615
Tumor
0.4
957
Tumor
0.4
873
Tumor
0.3
713
Tumor
0.3
533
Tumor
0.3
745
Tumor
0.3
277
Tumor
0.3
1014
Normal
0.3
937
Tumor
0.3
915
Tumor
0.3
517
Tumor
0.3
1041
Tumor
0.3
435
Tumor
0.3
518
Normal
0.3
685
Tumor
0.3
573
Tumor
0.3
874
Normal
0.3
514
Normal
0.3
697
Tumor
0.3
943
Tumor
0.3
858
Normal
0.3
553
Tumor
0.3
516
Normal
0.3
978
Normal
0.2
958
Normal
0.2
921
Tumor
0.2
278
Normal
0.2
484
Normal
0.2
488
Normal
0.2
727
Tumor
0.2
944
Normal
0.2
223
Tumor
0.2
1013
Tumor
0.2
332
Normal
0.2
461
Tumor
0.2
966
Normal
0.2
523
Tumor
0.2
956
Normal
0.2
737
Tumor
0.2
534
Normal
0.2
818
Normal
0.2
497
Tumor
0.2
743
Tumor
0.2
558
Normal
0.2
481
Tumor
0.2
914
Normal
0.2
1044
Normal
0.2
536
Normal
0.2
554
Normal
0.2
363
Tumor
0.2
816
Normal
0.2
526
Normal
0.2
387
Tumor
0.2
355
Tumor
0.2
125
Tumor
0.2
487
Tumor
0.2
415
Tumor
0.2
952
Normal
0.2
227
Tumor
0.2
528
Normal
0.2
545
Tumor
0.2
448
Normal
0.2
867
Tumor
0.2
785
Tumor
0.1
493
Tumor
0.1
1015
Tumor
0.1
965
Tumor
0.1
314
Normal
0.1
951
Tumor
0.1
224
Normal
0.1
824
Normal
0.1
483
Tumor
0.1
286
Normal
0.1
513
Tumor
0.1
361
Tumor
0.1
537
Tumor
0.1
412
Normal
0.1
975
Tumor
0.1
778
Normal
0.1
171
Tumor
0.1
258
Normal
0.1
328
Normal
0.1
443
Tumor
0.1
866
Normal
0.1
538
Normal
0.1
492
Normal
0.1
214
Normal
0.1
192
Normal
0.1
331
Tumor
0.1
494
Normal
0.1
213
Tumor
0.1
218
Normal
0.1
268
Normal
0.1
411
Tumor
0.1
696
Normal
0.1
572
Normal
0.1
312
Normal
0.1
297
Tumor
0.1
984
Normal
0.1
755
Tumor
0.1
686
Normal
0.1
444
Normal
0.1
728
Normal
0.1
742
Normal
0.1
471
Tumor
0.1
131
Tumor
0.1
546
Normal
0.1
564
Normal
0.1
852
Normal
0.1
857
Tumor
0.1
447
Tumor
0.1
462
Normal
0.1
923
Tumor
0.1
477
Tumor
0.1
298
Normal
0.1
356
Normal
0.1
738
Normal
0.1
715
Tumor
0.0
141
Tumor
0.0
695
Tumor
0.0
124
Normal
0.0
878
Normal
0.0
756
Normal
0.0
938
Normal
0.0
925
Tumor
0.0
142
Normal
0.0
132
Normal
0.0
1016
Normal
0.0
515
Tumor
0.0
981
Tumor
0.0
367
Tumor
0.0
267
Tumor
0.0
868
Normal
0.0
433
Tumor
0.0
698
Normal
0.0
472
Normal
0.0
647
Tumor
0.0
1043
Tumor
0.0
135
Tumor
0.0
616
Normal
0.0
284
Normal
0.0
222
Normal
0.0
161
Tumor
0.0
136
Normal
0.0
434
Normal
0.0
636
Normal
0.0
786
Normal
0.0
563
Tumor
0.0
416
Normal
0.0
474
Normal
0.0
128
Normal
0.0
147
Tumor
0.0
432
Normal
0.0
221
Tumor
0.0
864
Normal
0.0
861
Tumor
0.0
525
Tumor
0.0
618
Normal
0.0
188
Normal
0.0
862
Normal
0.0
232
Normal
0.0
1046
Normal
0.0
311
Tumor
0.0
746
Normal
0.0
877
Tumor
0.0
568
Normal
0.0
574
Normal
0.0
228
Normal
0.0
445
Tumor
0.0
911
Tumor
0.0
1028
Normal
0.0
814
Normal
0.0
145
Tumor
0.0
114
Normal
0.0
436
Normal
0.0
111
Normal
0.0
627
Tumor
-0.1
344
Normal
-0.1
185
Tumor
-0.1
722
Normal
-0.1
716
Normal
-0.1
357
Tumor
-0.1
272
Normal
-0.1
983
Tumor
-0.1
138
Normal
-0.1
172
Normal
-0.1
482
Normal
-0.1
126
Normal
-0.1
127
Tumor
-0.1
451
Tumor
-0.1
342
Normal
-0.1
285
Tumor
-0.1
463
Tumor
-0.1
863
Tumor
-0.1
567
Tumor
-0.1
162
Normal
-0.1
112
Tumor
-0.1
146
Normal
-0.1
642
Normal
-0.1
364
Normal
-0.1
913
Tumor
-0.1
468
Normal
-0.1
882
Normal
-0.1
186
Normal
-0.1
648
Normal
-0.1
535
Tumor
-0.1
714
Normal
-0.1
723
Tumor
-0.1
628
Normal
-0.1
392
Normal
-0.1
1026
Normal
-0.1
446
Normal
-0.1
148
Normal
-0.1
478
Normal
-0.2
744
Normal
-0.2
393
Tumor
-0.2
385
Tumor
-0.2
137
Tumor
-0.2
455
Tumor
-0.2
982
Normal
-0.2
813
Tumor
-0.2
466
Normal
-0.2
283
Tumor
-0.2
665
Tumor
-0.2
123
Tumor
-0.2
368
Normal
-0.2
741
Tumor
-0.2
187
Tumor
-0.2
1045
Tumor
-0.2
196
Normal
-0.2
383
Tumor
-0.2
365
Tumor
-0.2
353
Tumor
-0.2
375
Tumor
-0.2
358
Normal
-0.2
817
Tumor
-0.2
1021
Tumor
-0.2
376
Normal
-0.2
666
Normal
-0.2
464
Normal
-0.2
211
Tumor
-0.2
664
Normal
-0.2
362
Normal
-0.2
1032
Normal
-0.2
721
Tumor
-0.2
924
Normal
-0.2
641
Tumor
-0.2
571
Tumor
-0.2
195
Tumor
-0.2
851
Tumor
-0.3
672
Normal
-0.3
354
Normal
-0.3
617
Tumor
-0.3
384
Normal
-0.3
366
Normal
-0.3
262
Normal
-0.3
1042
Normal
-0.3
396
Normal
-0.3
557
Tumor
-0.3
386
Normal
-0.3
671
Tumor
-0.3
394
Normal
-0.3
388
Normal
-0.3
191
Tumor
-0.3
1022
Normal
-0.3
261
Tumor
-0.3
881
Tumor
-0.3
662
Normal
-0.3
231
Tumor
-0.3
473
Tumor
-0.3
217
Tumor
-0.3
352
Normal
-0.3
918
Normal
-0.3
912
Normal
-0.4
431
Tumor
-0.4
465
Tumor
-0.4
456
Normal
-0.4
884
Normal
-0.4
663
Tumor
-0.4
391
Tumor
-0.4
1031
Tumor
-0.4
917
Tumor
-0.4
815
Tumor
-0.4
883
Tumor
-0.4
395
Tumor
-0.5
922
Normal
-0.5
916
Normal
-0.5
452
Normal
-0.5
113
Tumor
-0.5
635
Tumor
-0.6
351
Tumor
-0.6
467
Tumor
-0.6
724
Normal
-0.6
661
Tumor
-0.7
926
Normal
-0.9
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
