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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COL5A3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
85.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
67.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
62.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
58.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
52.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
49.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
42.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
35.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COL5A3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
226.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
163.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
106.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
68.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
68.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
67.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
59.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
56.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
46.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
45.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
39.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
39.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
38.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
33.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
33.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
2.5
877
Tumor
1.4
343
Tumor
1.1
863
Tumor
1.1
713
Tumor
0.9
1028
Normal
0.8
192
Normal
0.8
375
Tumor
0.8
615
Tumor
0.8
545
Tumor
0.8
744
Normal
0.8
647
Tumor
0.8
915
Tumor
0.7
665
Tumor
0.7
982
Normal
0.7
355
Tumor
0.7
917
Tumor
0.7
671
Tumor
0.7
922
Normal
0.7
491
Tumor
0.7
984
Normal
0.7
916
Normal
0.7
535
Tumor
0.7
311
Tumor
0.7
1032
Normal
0.6
981
Tumor
0.6
627
Tumor
0.6
976
Normal
0.6
975
Tumor
0.6
952
Normal
0.6
1014
Normal
0.6
954
Normal
0.6
958
Normal
0.6
813
Tumor
0.5
923
Tumor
0.5
137
Tumor
0.5
383
Tumor
0.5
817
Tumor
0.5
363
Tumor
0.5
937
Tumor
0.5
697
Tumor
0.5
823
Tumor
0.5
964
Normal
0.5
515
Tumor
0.4
635
Tumor
0.4
943
Tumor
0.4
1042
Normal
0.4
818
Normal
0.4
185
Tumor
0.4
331
Tumor
0.4
953
Tumor
0.4
1045
Tumor
0.4
968
Normal
0.4
536
Normal
0.4
966
Normal
0.4
957
Tumor
0.4
878
Normal
0.3
883
Tumor
0.3
385
Tumor
0.3
938
Normal
0.3
921
Tumor
0.3
1016
Normal
0.3
745
Tumor
0.3
1015
Tumor
0.3
447
Tumor
0.3
395
Tumor
0.3
882
Normal
0.3
492
Normal
0.3
1026
Normal
0.3
141
Tumor
0.3
1046
Normal
0.3
912
Normal
0.3
478
Normal
0.2
195
Tumor
0.2
963
Tumor
0.2
672
Normal
0.2
297
Tumor
0.2
554
Normal
0.2
755
Tumor
0.2
814
Normal
0.2
223
Tumor
0.2
196
Normal
0.2
924
Normal
0.2
746
Normal
0.2
425
Tumor
0.2
213
Tumor
0.2
918
Normal
0.2
926
Normal
0.2
698
Normal
0.2
327
Tumor
0.2
1022
Normal
0.2
113
Tumor
0.2
354
Normal
0.1
277
Tumor
0.1
513
Tumor
0.1
445
Tumor
0.1
124
Normal
0.1
525
Tumor
0.1
472
Normal
0.1
467
Tumor
0.1
393
Tumor
0.1
444
Normal
0.1
473
Tumor
0.1
394
Normal
0.1
881
Tumor
0.1
172
Normal
0.1
161
Tumor
0.1
866
Normal
0.1
778
Normal
0.1
421
Tumor
0.1
431
Tumor
0.1
224
Normal
0.1
743
Tumor
0.1
636
Normal
0.1
538
Normal
0.1
228
Normal
0.1
344
Normal
0.1
452
Normal
0.1
857
Tumor
0.1
142
Normal
0.1
498
Normal
0.1
461
Tumor
0.1
546
Normal
0.1
852
Normal
0.1
488
Normal
0.1
126
Normal
0.1
186
Normal
0.1
616
Normal
0.1
364
Normal
0.1
723
Tumor
0.1
463
Tumor
0.0
365
Tumor
0.0
516
Normal
0.0
284
Normal
0.0
642
Normal
0.0
132
Normal
0.0
518
Normal
0.0
493
Tumor
0.0
824
Normal
0.0
455
Tumor
0.0
145
Tumor
0.0
695
Tumor
0.0
352
Normal
0.0
191
Tumor
0.0
663
Tumor
0.0
434
Normal
0.0
1044
Normal
0.0
388
Normal
0.0
914
Normal
0.0
484
Normal
0.0
944
Normal
0.0
423
Tumor
0.0
742
Normal
0.0
574
Normal
0.0
464
Normal
0.0
858
Normal
0.0
127
Tumor
0.0
468
Normal
0.0
138
Normal
0.0
482
Normal
0.0
715
Tumor
0.0
386
Normal
0.0
268
Normal
0.0
146
Normal
0.0
874
Normal
0.0
722
Normal
0.0
474
Normal
0.0
497
Tumor
0.0
685
Tumor
0.0
534
Normal
0.0
128
Normal
0.0
978
Normal
0.0
392
Normal
0.0
517
Tumor
0.0
135
Tumor
-0.1
526
Normal
-0.1
618
Normal
-0.1
728
Normal
-0.1
956
Normal
-0.1
977
Tumor
-0.1
214
Normal
-0.1
188
Normal
-0.1
396
Normal
-0.1
884
Normal
-0.1
227
Tumor
-0.1
384
Normal
-0.1
864
Normal
-0.1
951
Tumor
-0.1
368
Normal
-0.1
564
Normal
-0.1
456
Normal
-0.1
494
Normal
-0.1
136
Normal
-0.1
432
Normal
-0.1
785
Tumor
-0.1
965
Tumor
-0.1
416
Normal
-0.1
816
Normal
-0.1
867
Tumor
-0.1
446
Normal
-0.1
553
Tumor
-0.1
738
Normal
-0.1
187
Tumor
-0.1
483
Tumor
-0.1
366
Normal
-0.1
435
Tumor
-0.2
514
Normal
-0.2
436
Normal
-0.2
628
Normal
-0.2
361
Tumor
-0.2
217
Tumor
-0.2
328
Normal
-0.2
666
Normal
-0.2
563
Tumor
-0.2
131
Tumor
-0.2
414
Normal
-0.2
528
Normal
-0.2
913
Tumor
-0.2
112
Tumor
-0.2
424
Normal
-0.2
367
Tumor
-0.2
312
Normal
-0.2
481
Tumor
-0.2
524
Normal
-0.2
272
Normal
-0.2
786
Normal
-0.2
716
Normal
-0.2
428
Normal
-0.2
868
Normal
-0.2
1043
Tumor
-0.2
342
Normal
-0.2
356
Normal
-0.2
462
Normal
-0.2
664
Normal
-0.2
114
Normal
-0.2
861
Tumor
-0.2
415
Tumor
-0.2
412
Normal
-0.2
422
Normal
-0.2
286
Normal
-0.2
686
Normal
-0.2
448
Normal
-0.3
756
Normal
-0.3
466
Normal
-0.3
477
Tumor
-0.3
433
Tumor
-0.3
696
Normal
-0.3
313
Tumor
-0.3
298
Normal
-0.3
111
Normal
-0.3
862
Normal
-0.3
815
Tumor
-0.3
162
Normal
-0.3
427
Tumor
-0.3
648
Normal
-0.3
572
Normal
-0.3
777
Tumor
-0.3
533
Tumor
-0.3
148
Normal
-0.3
873
Tumor
-0.3
278
Normal
-0.3
1031
Tumor
-0.3
727
Tumor
-0.4
911
Tumor
-0.4
314
Normal
-0.4
332
Normal
-0.4
983
Tumor
-0.4
211
Tumor
-0.4
714
Normal
-0.4
741
Tumor
-0.4
558
Normal
-0.4
212
Normal
-0.4
362
Normal
-0.4
125
Tumor
-0.4
443
Tumor
-0.4
523
Tumor
-0.4
258
Normal
-0.4
262
Normal
-0.4
376
Normal
-0.4
353
Tumor
-0.5
527
Tumor
-0.5
1041
Tumor
-0.5
487
Tumor
-0.5
865
Tumor
-0.5
231
Tumor
-0.5
426
Normal
-0.5
573
Tumor
-0.5
218
Normal
-0.5
387
Tumor
-0.5
851
Tumor
-0.5
662
Normal
-0.5
391
Tumor
-0.5
641
Tumor
-0.5
261
Tumor
-0.5
123
Tumor
-0.5
451
Tumor
-0.6
925
Tumor
-0.6
221
Tumor
-0.6
557
Tumor
-0.6
568
Normal
-0.6
724
Normal
-0.6
617
Tumor
-0.6
465
Tumor
-0.6
232
Normal
-0.6
147
Tumor
-0.7
471
Tumor
-0.7
413
Tumor
-0.7
341
Tumor
-0.7
267
Tumor
-0.7
411
Tumor
-0.7
721
Tumor
-0.7
571
Tumor
-0.7
271
Tumor
-0.7
537
Tumor
-0.7
737
Tumor
-0.8
358
Normal
-0.8
955
Tumor
-0.8
222
Normal
-0.8
1025
Tumor
-0.8
1027
Tumor
-0.8
257
Tumor
-0.8
567
Tumor
-0.9
967
Tumor
-0.9
1013
Tumor
-1.0
661
Tumor
-1.0
171
Tumor
-1.1
1021
Tumor
-1.3
357
Tumor
-1.6
285
Tumor
-1.9
351
Tumor
-2.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
