MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.1 nTPM
HPA Brain:25.0 nTPM
GTEx:2.1 nTPM
FANTOM5:6.3 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:21.3 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 25.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.2
2411 Female, age 72, unknown 23.9
2586 Male, age 75, left hemisphere 23.8
1827 Male, age 72, unknown 22.8
2019 Male, age 18, unknown 22.1
2219 Male, age 76, both hemispheres 21.8
1833 Male, age 53, unknown 20.3
1870 Female, age 42, unknown 20.3
2666 Male, age 74, left hemisphere 19.7
1830 Male, age 51, unknown 18.5
2828 Female, age 72, unknown 18.4
Dorsal raphe nucleus
nTPM: 22.0
2298 Female, age 72, unknown 24.7
2016 Female, age 72, unknown 22.7
2047 Male, age 72, unknown 21.4
1828 Male, age 53, unknown 21.3
2750 Male, age 76, both hemispheres 19.7
Inferior colliculus
nTPM: 23.8
2849 Male, age 72, unknown 25.2
2097 Female, age 72, unknown 24.9
1848 Female, age 42, unknown 23.3
1890 Male, age 53, unknown 22.0
Median raphe nucleus
nTPM: 25.0
2220 Male, age 76, midline 25.0
Periaquaductal grey, anterior
nTPM: 23.5
2502 Female, age 75, unknown 30.0
1795 Male, age 51, unknown 20.9
1947 Male, age 18, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 24.9
1840 Male, age 53, unknown 29.7
1831 Male, age 72, unknown 23.9
2850 Male, age 76, both hemispheres 23.6
2464 Female, age 72, unknown 22.5
Periaquaductal grey, lateral
nTPM: 22.2
2140 Male, age 76, both hemispheres 25.1
2272 Male, age 74, both hemispheres 20.9
2053 Male, age 18, unknown 20.7
Pretectal area
nTPM: 25.0
1944 Female, age 72, unknown 33.1
1816 Male, age 51, unknown 31.5
2007 Male, age 72, unknown 29.3
2224 Female, age 72, unknown 28.0
1817 Female, age 42, unknown 25.2
1815 Male, age 53, unknown 24.8
2273 Male, age 74, both hemispheres 24.4
2825 Male, age 18, unknown 20.8
2667 Female, age 75, unknown 20.1
2407 Male, age 75, both hemispheres 19.7
2316 Male, age 76, right hemisphere 17.7
Red nucleus
nTPM: 17.0
2785 Male, age 18, unknown 23.4
2584 Male, age 75, left hemisphere 19.7
2725 Female, age 75, unknown 19.1
2588 Male, age 74, left hemisphere 18.4
2503 Female, age 72, unknown 17.4
1821 Female, age 72, unknown 16.9
2227 Male, age 72, unknown 15.7
1954 Female, age 42, unknown 15.5
1865 Male, age 51, unknown 14.9
1904 Male, age 53, unknown 14.6
2769 Male, age 72, unknown 14.6
2823 Male, age 76, right hemisphere 13.8
Substantia nigra
nTPM: 22.4
1889 Female, age 72, unknown 27.1
2241 Male, age 72, unknown 25.2
1851 Male, age 51, unknown 24.5
1916 Female, age 42, unknown 24.5
2665 Male, age 74, both hemispheres 23.7
1941 Male, age 53, unknown 22.6
2699 Male, age 18, unknown 20.3
2583 Male, age 75, right hemisphere 19.0
2590 Female, age 75, unknown 18.5
2409 Female, age 72, unknown 18.2
Superior colliculus
nTPM: 22.2
2087 Female, age 72, unknown 28.5
2261 Male, age 18, unknown 24.8
2664 Male, age 75, both hemispheres 23.3
1796 Male, age 53, unknown 22.2
2587 Male, age 74, left hemisphere 21.8
2668 Female, age 75, unknown 21.8
1895 Male, age 76, right hemisphere 21.6
1839 Male, age 51, unknown 21.4
1913 Female, age 42, unknown 18.5
1995 Male, age 72, unknown 18.5
Ventral tegmental area
nTPM: 21.5
2218 Male, age 76, both hemispheres 26.0
2021 Male, age 53, unknown 22.7
1915 Female, age 42, unknown 22.3
1942 Male, age 51, unknown 21.7
2410 Female, age 72, unknown 20.6
2223 Female, age 72, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.1
Samples: 139

Max nTPM: 4.1
Min nTPM: 0.8
Std nTPM: 0.6
Median nTPM: 2.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 4.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 3.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 3.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 3.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 3.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 3.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 3.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 2.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.3
FF:10158-103A5 76 years, female 6.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 8.6
Sample A Female 16.0
Sample B Female 11.2
Sample C Male 17.1
Sample D Male 8.6
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 12.2
Sample A Female 13.7
Sample B Female 13.4
Sample C Male 18.2
Sample D Male 12.2
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 15.0
Min nTPM: 10.7
Sample B Female 12.8
Sample C Male 15.0
Sample D Male 10.7
Superior colliculi
nTPM: 13.9
Samples: 4

Max nTPM: 16.3
Min nTPM: 9.1
Sample A Female 14.9
Sample B Female 9.1
Sample C Male 16.3
Sample D Male 15.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 22.2
Min nTPM: 20.4
Sample A Male 20.4
Sample B Male 22.1
Sample C Female 22.2
Sample D Female 20.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
77800893 Antisense, RP_070212_01_A09, Mouse strain C57BL/6J (56 days, male) 2.1

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