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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB21 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB21 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.9
Number of samples
231
Samples
Sample
Description
TPM
DO50832
0 years, male, NA, stage:3, alive, 90 days
50.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.0
445
Tumor
0.9
527
Tumor
0.9
367
Tumor
0.8
1013
Tumor
0.7
745
Tumor
0.6
741
Tumor
0.6
697
Tumor
0.5
685
Tumor
0.5
567
Tumor
0.4
737
Tumor
0.4
351
Tumor
0.4
411
Tumor
0.4
957
Tumor
0.4
123
Tumor
0.4
921
Tumor
0.3
491
Tumor
0.3
851
Tumor
0.3
545
Tumor
0.3
755
Tumor
0.3
746
Normal
0.3
727
Tumor
0.3
412
Normal
0.3
231
Tumor
0.3
1025
Tumor
0.3
343
Tumor
0.3
356
Normal
0.2
981
Tumor
0.2
715
Tumor
0.2
925
Tumor
0.2
538
Normal
0.2
967
Tumor
0.2
488
Normal
0.2
261
Tumor
0.2
873
Tumor
0.2
553
Tumor
0.2
698
Normal
0.2
857
Tumor
0.2
515
Tumor
0.2
537
Tumor
0.2
1021
Tumor
0.2
487
Tumor
0.2
497
Tumor
0.2
915
Tumor
0.2
484
Normal
0.2
1043
Tumor
0.2
742
Normal
0.2
554
Normal
0.2
147
Tumor
0.2
863
Tumor
0.2
938
Normal
0.2
342
Normal
0.2
952
Normal
0.2
954
Normal
0.2
258
Normal
0.2
435
Tumor
0.2
944
Normal
0.2
728
Normal
0.2
1031
Tumor
0.2
744
Normal
0.2
171
Tumor
0.2
882
Normal
0.1
257
Tumor
0.1
493
Tumor
0.1
364
Normal
0.1
738
Normal
0.1
142
Normal
0.1
131
Tumor
0.1
328
Normal
0.1
494
Normal
0.1
533
Tumor
0.1
723
Tumor
0.1
513
Tumor
0.1
724
Normal
0.1
966
Normal
0.1
358
Normal
0.1
354
Normal
0.1
743
Tumor
0.1
1014
Normal
0.1
492
Normal
0.1
1026
Normal
0.1
815
Tumor
0.1
283
Tumor
0.1
463
Tumor
0.1
877
Tumor
0.1
535
Tumor
0.1
524
Normal
0.1
124
Normal
0.1
958
Normal
0.1
125
Tumor
0.1
448
Normal
0.1
861
Tumor
0.1
977
Tumor
0.1
878
Normal
0.1
571
Tumor
0.1
955
Tumor
0.1
534
Normal
0.1
1045
Tumor
0.1
956
Normal
0.1
1046
Normal
0.1
361
Tumor
0.1
523
Tumor
0.1
964
Normal
0.1
232
Normal
0.1
546
Normal
0.1
498
Normal
0.1
953
Tumor
0.0
528
Normal
0.0
943
Tumor
0.0
911
Tumor
0.0
573
Tumor
0.0
127
Tumor
0.0
344
Normal
0.0
983
Tumor
0.0
572
Normal
0.0
1028
Normal
0.0
352
Normal
0.0
968
Normal
0.0
982
Normal
0.0
1022
Normal
0.0
756
Normal
0.0
128
Normal
0.0
431
Tumor
0.0
376
Normal
0.0
536
Normal
0.0
714
Normal
0.0
786
Normal
0.0
363
Tumor
0.0
365
Tumor
0.0
211
Tumor
0.0
976
Normal
0.0
148
Normal
0.0
111
Normal
0.0
862
Normal
0.0
778
Normal
0.0
1015
Tumor
0.0
416
Normal
0.0
481
Tumor
0.0
918
Normal
0.0
472
Normal
0.0
696
Normal
0.0
228
Normal
0.0
785
Tumor
0.0
1044
Normal
0.0
1032
Normal
0.0
777
Tumor
0.0
914
Normal
0.0
568
Normal
0.0
518
Normal
0.0
1041
Tumor
0.0
525
Tumor
0.0
926
Normal
0.0
984
Normal
0.0
474
Normal
0.0
713
Tumor
0.0
262
Normal
0.0
884
Normal
0.0
937
Tumor
0.0
227
Tumor
0.0
912
Normal
0.0
517
Tumor
0.0
564
Normal
0.0
823
Tumor
0.0
313
Tumor
0.0
462
Normal
0.0
471
Tumor
0.0
341
Tumor
0.0
425
Tumor
0.0
482
Normal
-0.1
516
Normal
-0.1
483
Tumor
-0.1
362
Normal
-0.1
924
Normal
-0.1
526
Normal
-0.1
664
Normal
-0.1
922
Normal
-0.1
415
Tumor
-0.1
146
Normal
-0.1
978
Normal
-0.1
272
Normal
-0.1
615
Tumor
-0.1
447
Tumor
-0.1
824
Normal
-0.1
271
Tumor
-0.1
327
Tumor
-0.1
145
Tumor
-0.1
1042
Normal
-0.1
357
Tumor
-0.1
222
Normal
-0.1
286
Normal
-0.1
212
Normal
-0.1
366
Normal
-0.1
298
Normal
-0.1
428
Normal
-0.1
866
Normal
-0.1
314
Normal
-0.1
916
Normal
-0.1
132
Normal
-0.1
917
Tumor
-0.1
816
Normal
-0.1
852
Normal
-0.1
196
Normal
-0.1
436
Normal
-0.1
114
Normal
-0.1
422
Normal
-0.1
695
Tumor
-0.1
332
Normal
-0.1
558
Normal
-0.1
478
Normal
-0.1
355
Tumor
-0.1
385
Tumor
-0.1
285
Tumor
-0.1
443
Tumor
-0.1
864
Normal
-0.1
813
Tumor
-0.1
451
Tumor
-0.1
331
Tumor
-0.1
223
Tumor
-0.1
278
Normal
-0.1
218
Normal
-0.1
721
Tumor
-0.1
135
Tumor
-0.1
394
Normal
-0.1
136
Normal
-0.1
421
Tumor
-0.1
477
Tumor
-0.1
1016
Normal
-0.1
514
Normal
-0.1
874
Normal
-0.1
716
Normal
-0.1
353
Tumor
-0.1
414
Normal
-0.1
185
Tumor
-0.1
557
Tumor
-0.1
392
Normal
-0.1
686
Normal
-0.1
648
Normal
-0.1
951
Tumor
-0.1
865
Tumor
-0.1
965
Tumor
-0.2
188
Normal
-0.2
574
Normal
-0.2
434
Normal
-0.2
868
Normal
-0.2
424
Normal
-0.2
858
Normal
-0.2
563
Tumor
-0.2
627
Tumor
-0.2
375
Tumor
-0.2
722
Normal
-0.2
186
Normal
-0.2
112
Tumor
-0.2
368
Normal
-0.2
636
Normal
-0.2
214
Normal
-0.2
284
Normal
-0.2
383
Tumor
-0.2
311
Tumor
-0.2
923
Tumor
-0.2
161
Tumor
-0.2
393
Tumor
-0.2
172
Normal
-0.2
138
Normal
-0.2
818
Normal
-0.2
426
Normal
-0.2
221
Tumor
-0.2
617
Tumor
-0.2
618
Normal
-0.2
268
Normal
-0.2
466
Normal
-0.2
162
Normal
-0.2
396
Normal
-0.2
388
Normal
-0.2
217
Tumor
-0.2
867
Tumor
-0.2
192
Normal
-0.2
461
Tumor
-0.2
267
Tumor
-0.2
224
Normal
-0.2
666
Normal
-0.2
616
Normal
-0.2
433
Tumor
-0.2
661
Tumor
-0.2
113
Tumor
-0.3
277
Tumor
-0.3
963
Tumor
-0.3
663
Tumor
-0.3
647
Tumor
-0.3
455
Tumor
-0.3
881
Tumor
-0.3
975
Tumor
-0.3
642
Normal
-0.3
126
Normal
-0.3
137
Tumor
-0.3
817
Tumor
-0.3
387
Tumor
-0.3
187
Tumor
-0.3
384
Normal
-0.3
473
Tumor
-0.3
662
Normal
-0.3
391
Tumor
-0.3
297
Tumor
-0.3
452
Normal
-0.3
395
Tumor
-0.3
665
Tumor
-0.3
312
Normal
-0.3
464
Normal
-0.3
456
Normal
-0.3
444
Normal
-0.3
446
Normal
-0.3
386
Normal
-0.3
141
Tumor
-0.3
672
Normal
-0.3
913
Tumor
-0.4
213
Tumor
-0.4
883
Tumor
-0.4
432
Normal
-0.4
635
Tumor
-0.4
195
Tumor
-0.4
628
Normal
-0.4
671
Tumor
-0.4
468
Normal
-0.4
423
Tumor
-0.4
465
Tumor
-0.4
413
Tumor
-0.5
814
Normal
-0.5
427
Tumor
-0.5
641
Tumor
-0.5
467
Tumor
-0.6
191
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
