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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC35C2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
55.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
48.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
45.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
44.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
42.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
41.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
39.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
38.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
38.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
37.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
36.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
34.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
33.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
31.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
30.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
24.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC35C2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.6
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
108.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
63.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
58.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
57.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
48.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
47.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
44.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
44.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
43.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
41.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
40.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
39.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
38.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
38.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
28.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
171
Tumor
1.7
186
Normal
1.6
188
Normal
1.3
148
Normal
1.3
172
Normal
1.3
162
Normal
1.3
332
Normal
1.2
126
Normal
1.1
314
Normal
1.1
278
Normal
1.1
741
Tumor
1.0
161
Tumor
1.0
128
Normal
1.0
312
Normal
1.0
662
Normal
0.9
136
Normal
0.9
187
Tumor
0.9
298
Normal
0.9
132
Normal
0.8
468
Normal
0.8
465
Tumor
0.8
456
Normal
0.8
185
Tumor
0.8
648
Normal
0.8
124
Normal
0.7
127
Tumor
0.7
138
Normal
0.7
114
Normal
0.7
1015
Tumor
0.6
277
Tumor
0.6
452
Normal
0.6
627
Tumor
0.6
981
Tumor
0.6
146
Normal
0.6
464
Normal
0.6
141
Tumor
0.6
615
Tumor
0.6
664
Normal
0.6
112
Tumor
0.6
232
Normal
0.6
742
Normal
0.6
636
Normal
0.6
571
Tumor
0.5
451
Tumor
0.5
137
Tumor
0.5
481
Tumor
0.5
813
Tumor
0.5
328
Normal
0.5
635
Tumor
0.5
145
Tumor
0.5
113
Tumor
0.5
396
Normal
0.5
313
Tumor
0.5
466
Normal
0.5
147
Tumor
0.5
628
Normal
0.5
738
Normal
0.5
123
Tumor
0.5
558
Normal
0.4
267
Tumor
0.4
331
Tumor
0.4
564
Normal
0.4
327
Tumor
0.4
478
Normal
0.4
666
Normal
0.4
268
Normal
0.4
722
Normal
0.4
228
Normal
0.4
297
Tumor
0.4
616
Normal
0.4
135
Tumor
0.4
642
Normal
0.3
728
Normal
0.3
258
Normal
0.3
388
Normal
0.3
695
Tumor
0.3
884
Normal
0.3
111
Normal
0.3
641
Tumor
0.3
723
Tumor
0.3
386
Normal
0.3
394
Normal
0.3
467
Tumor
0.3
618
Normal
0.3
574
Normal
0.3
1016
Normal
0.3
727
Tumor
0.3
262
Normal
0.2
977
Tumor
0.2
568
Normal
0.2
665
Tumor
0.2
786
Normal
0.2
261
Tumor
0.2
814
Normal
0.2
534
Normal
0.2
557
Tumor
0.2
746
Normal
0.2
864
Normal
0.2
431
Tumor
0.2
724
Normal
0.2
482
Normal
0.2
572
Normal
0.2
744
Normal
0.2
982
Normal
0.2
926
Normal
0.2
392
Normal
0.1
224
Normal
0.1
462
Normal
0.1
686
Normal
0.1
877
Tumor
0.1
387
Tumor
0.1
284
Normal
0.1
463
Tumor
0.1
696
Normal
0.1
818
Normal
0.1
311
Tumor
0.1
978
Normal
0.1
911
Tumor
0.1
968
Normal
0.1
474
Normal
0.1
867
Tumor
0.1
672
Normal
0.1
713
Tumor
0.1
716
Normal
0.1
714
Normal
0.1
881
Tumor
0.1
272
Normal
0.1
433
Tumor
0.1
286
Normal
0.0
647
Tumor
0.0
435
Tumor
0.0
868
Normal
0.0
142
Normal
0.0
356
Normal
0.0
852
Normal
0.0
663
Tumor
0.0
984
Normal
0.0
882
Normal
0.0
964
Normal
0.0
1046
Normal
0.0
913
Tumor
0.0
444
Normal
0.0
976
Normal
0.0
472
Normal
0.0
477
Tumor
0.0
445
Tumor
0.0
528
Normal
-0.1
874
Normal
-0.1
685
Tumor
-0.1
546
Normal
-0.1
411
Tumor
-0.1
231
Tumor
-0.1
918
Normal
-0.1
824
Normal
-0.1
573
Tumor
-0.1
924
Normal
-0.1
958
Normal
-0.1
743
Tumor
-0.1
858
Normal
-0.1
125
Tumor
-0.1
393
Tumor
-0.1
448
Normal
-0.1
526
Normal
-0.1
563
Tumor
-0.1
866
Normal
-0.1
1027
Tumor
-0.1
1014
Normal
-0.1
912
Normal
-0.1
878
Normal
-0.1
212
Normal
-0.1
915
Tumor
-0.2
461
Tumor
-0.2
857
Tumor
-0.2
966
Normal
-0.2
1028
Normal
-0.2
661
Tumor
-0.2
527
Tumor
-0.2
617
Tumor
-0.2
967
Tumor
-0.2
554
Normal
-0.2
1044
Normal
-0.2
1042
Normal
-0.2
715
Tumor
-0.2
271
Tumor
-0.2
916
Normal
-0.2
455
Tumor
-0.2
778
Normal
-0.2
863
Tumor
-0.2
524
Normal
-0.2
965
Tumor
-0.2
721
Tumor
-0.2
385
Tumor
-0.3
698
Normal
-0.3
737
Tumor
-0.3
1032
Normal
-0.3
391
Tumor
-0.3
446
Normal
-0.3
883
Tumor
-0.3
1022
Normal
-0.3
873
Tumor
-0.3
816
Normal
-0.3
1026
Normal
-0.3
851
Tumor
-0.3
516
Normal
-0.3
922
Normal
-0.3
518
Normal
-0.3
517
Tumor
-0.3
432
Normal
-0.4
861
Tumor
-0.4
514
Normal
-0.4
436
Normal
-0.4
862
Normal
-0.4
447
Tumor
-0.4
1041
Tumor
-0.4
921
Tumor
-0.4
777
Tumor
-0.4
567
Tumor
-0.4
227
Tumor
-0.4
395
Tumor
-0.4
756
Normal
-0.5
257
Tumor
-0.5
416
Normal
-0.5
283
Tumor
-0.5
538
Normal
-0.5
488
Normal
-0.5
963
Tumor
-0.5
494
Normal
-0.5
1045
Tumor
-0.5
285
Tumor
-0.5
983
Tumor
-0.6
364
Normal
-0.6
513
Tumor
-0.6
865
Tumor
-0.6
443
Tumor
-0.6
473
Tumor
-0.6
923
Tumor
-0.6
525
Tumor
-0.6
412
Normal
-0.6
755
Tumor
-0.7
471
Tumor
-0.7
745
Tumor
-0.7
484
Normal
-0.7
498
Normal
-0.7
925
Tumor
-0.7
1043
Tumor
-0.7
363
Tumor
-0.7
975
Tumor
-0.7
815
Tumor
-0.7
1021
Tumor
-0.7
545
Tumor
-0.7
1013
Tumor
-0.7
523
Tumor
-0.7
533
Tumor
-0.7
785
Tumor
-0.7
223
Tumor
-0.7
211
Tumor
-0.8
823
Tumor
-0.8
914
Normal
-0.8
434
Normal
-0.8
817
Tumor
-0.8
515
Tumor
-0.9
537
Tumor
-0.9
487
Tumor
-0.9
917
Tumor
-0.9
415
Tumor
-1.0
131
Tumor
-1.1
957
Tumor
-1.1
1025
Tumor
-1.2
536
Normal
-1.2
355
Tumor
-1.2
553
Tumor
-1.3
497
Tumor
-1.3
491
Tumor
-1.4
671
Tumor
-1.5
483
Tumor
-1.5
697
Tumor
-1.6
1031
Tumor
-1.6
492
Normal
-1.7
535
Tumor
-1.8
493
Tumor
-1.9
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
