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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDX1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
114.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
102.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
93.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
86.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
85.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
84.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
81.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
78.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
75.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
75.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
68.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
68.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
67.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
64.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
63.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
63.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
63.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
62.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
60.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
58.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
57.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
57.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
56.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
55.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
55.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
54.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
54.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
53.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
53.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
53.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
52.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
52.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
50.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
50.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
50.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
50.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
50.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
49.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
48.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
48.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
47.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
46.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
46.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
46.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
46.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
45.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
45.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
45.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
43.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
43.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
43.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
43.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
42.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
42.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
42.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
42.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
41.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
41.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
41.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
40.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
40.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
39.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
39.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
38.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
38.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
36.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
36.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
36.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
36.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
36.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
35.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
34.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
33.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
33.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
32.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
31.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
29.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDX1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.6
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
114.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
81.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
71.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
68.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
64.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
63.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
63.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
61.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
61.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
57.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
54.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
53.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
52.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
52.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
52.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
50.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
49.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
49.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
49.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
48.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
48.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
47.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
46.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
46.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
46.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
46.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
45.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
45.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
44.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
44.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
44.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
43.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
43.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
42.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
42.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
42.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
42.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
41.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
41.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
41.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
40.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
39.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
38.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
38.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
37.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
37.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
37.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
36.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
35.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
35.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
35.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
34.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
34.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
34.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
34.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
34.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
33.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
32.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
31.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
29.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
28.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
27.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
0.7
527
Tumor
0.6
513
Tumor
0.6
515
Tumor
0.5
983
Tumor
0.5
137
Tumor
0.5
1027
Tumor
0.5
395
Tumor
0.5
737
Tumor
0.4
695
Tumor
0.4
1025
Tumor
0.4
487
Tumor
0.4
965
Tumor
0.4
685
Tumor
0.4
967
Tumor
0.4
135
Tumor
0.4
425
Tumor
0.3
461
Tumor
0.3
257
Tumor
0.3
745
Tumor
0.3
443
Tumor
0.3
661
Tumor
0.3
815
Tumor
0.3
131
Tumor
0.3
477
Tumor
0.3
493
Tumor
0.3
471
Tumor
0.3
227
Tumor
0.3
937
Tumor
0.3
1015
Tumor
0.3
697
Tumor
0.3
533
Tumor
0.3
411
Tumor
0.3
431
Tumor
0.3
785
Tumor
0.3
557
Tumor
0.3
387
Tumor
0.3
975
Tumor
0.2
943
Tumor
0.2
1021
Tumor
0.2
383
Tumor
0.2
357
Tumor
0.2
355
Tumor
0.2
455
Tumor
0.2
545
Tumor
0.2
957
Tumor
0.2
285
Tumor
0.2
1013
Tumor
0.2
635
Tumor
0.2
185
Tumor
0.2
755
Tumor
0.2
881
Tumor
0.2
981
Tumor
0.2
473
Tumor
0.2
523
Tumor
0.2
497
Tumor
0.2
955
Tumor
0.2
1031
Tumor
0.2
925
Tumor
0.2
917
Tumor
0.2
865
Tumor
0.2
863
Tumor
0.2
977
Tumor
0.2
211
Tumor
0.2
953
Tumor
0.2
427
Tumor
0.2
823
Tumor
0.2
567
Tumor
0.2
271
Tumor
0.1
385
Tumor
0.1
1041
Tumor
0.1
421
Tumor
0.1
671
Tumor
0.1
363
Tumor
0.1
467
Tumor
0.1
873
Tumor
0.1
492
Normal
0.1
724
Normal
0.1
415
Tumor
0.1
861
Tumor
0.1
113
Tumor
0.1
663
Tumor
0.1
447
Tumor
0.1
353
Tumor
0.1
627
Tumor
0.1
563
Tumor
0.1
913
Tumor
0.1
223
Tumor
0.1
877
Tumor
0.1
817
Tumor
0.1
741
Tumor
0.1
535
Tumor
0.1
867
Tumor
0.1
916
Normal
0.1
141
Tumor
0.1
375
Tumor
0.1
721
Tumor
0.1
923
Tumor
0.1
571
Tumor
0.1
433
Tumor
0.0
857
Tumor
0.0
743
Tumor
0.0
212
Normal
0.0
221
Tumor
0.0
924
Normal
0.0
327
Tumor
0.0
283
Tumor
0.0
161
Tumor
0.0
915
Tumor
0.0
558
Normal
0.0
713
Tumor
0.0
723
Tumor
0.0
918
Normal
0.0
491
Tumor
0.0
284
Normal
0.0
727
Tumor
0.0
665
Tumor
0.0
213
Tumor
0.0
951
Tumor
0.0
478
Normal
0.0
553
Tumor
0.0
195
Tumor
0.0
756
Normal
0.0
538
Normal
0.0
778
Normal
0.0
883
Tumor
0.0
1045
Tumor
0.0
525
Tumor
0.0
413
Tumor
0.0
852
Normal
0.0
423
Tumor
0.0
922
Normal
0.0
938
Normal
0.0
537
Tumor
0.0
518
Normal
0.0
311
Tumor
0.0
921
Tumor
0.0
956
Normal
0.0
445
Tumor
0.0
954
Normal
0.0
746
Normal
0.0
524
Normal
0.0
963
Tumor
0.0
412
Normal
0.0
714
Normal
0.0
514
Normal
0.0
968
Normal
0.0
356
Normal
0.0
868
Normal
0.0
696
Normal
0.0
483
Tumor
0.0
716
Normal
0.0
365
Tumor
0.0
188
Normal
0.0
686
Normal
0.0
494
Normal
0.0
944
Normal
0.0
147
Tumor
0.0
1028
Normal
0.0
628
Normal
-0.1
615
Tumor
-0.1
786
Normal
-0.1
451
Tumor
-0.1
361
Tumor
-0.1
1042
Normal
-0.1
386
Normal
-0.1
715
Tumor
-0.1
462
Normal
-0.1
351
Tumor
-0.1
362
Normal
-0.1
554
Normal
-0.1
617
Tumor
-0.1
964
Normal
-0.1
331
Tumor
-0.1
384
Normal
-0.1
952
Normal
-0.1
958
Normal
-0.1
1014
Normal
-0.1
481
Tumor
-0.1
982
Normal
-0.1
228
Normal
-0.1
498
Normal
-0.1
616
Normal
-0.1
516
Normal
-0.1
526
Normal
-0.1
926
Normal
-0.1
112
Tumor
-0.1
864
Normal
-0.1
224
Normal
-0.1
1043
Tumor
-0.1
1046
Normal
-0.1
824
Normal
-0.1
647
Tumor
-0.1
328
Normal
-0.1
874
Normal
-0.1
444
Normal
-0.1
966
Normal
-0.1
268
Normal
-0.1
416
Normal
-0.1
984
Normal
-0.1
448
Normal
-0.1
536
Normal
-0.1
313
Tumor
-0.1
474
Normal
-0.1
277
Tumor
-0.1
286
Normal
-0.1
728
Normal
-0.1
142
Normal
-0.1
528
Normal
-0.1
858
Normal
-0.1
738
Normal
-0.1
278
Normal
-0.1
393
Tumor
-0.1
172
Normal
-0.1
1026
Normal
-0.1
1016
Normal
-0.1
978
Normal
-0.1
484
Normal
-0.1
911
Tumor
-0.1
814
Normal
-0.1
434
Normal
-0.1
572
Normal
-0.1
364
Normal
-0.1
742
Normal
-0.1
851
Tumor
-0.1
367
Tumor
-0.1
568
Normal
-0.1
314
Normal
-0.1
636
Normal
-0.1
866
Normal
-0.1
698
Normal
-0.1
192
Normal
-0.1
564
Normal
-0.1
488
Normal
-0.1
218
Normal
-0.1
432
Normal
-0.1
573
Tumor
-0.1
424
Normal
-0.1
666
Normal
-0.1
472
Normal
-0.1
146
Normal
-0.1
261
Tumor
-0.1
664
Normal
-0.1
126
Normal
-0.1
884
Normal
-0.1
672
Normal
-0.1
312
Normal
-0.1
818
Normal
-0.1
267
Tumor
-0.1
662
Normal
-0.1
191
Tumor
-0.1
546
Normal
-0.1
436
Normal
-0.1
862
Normal
-0.1
422
Normal
-0.1
111
Normal
-0.1
272
Normal
-0.1
392
Normal
-0.1
388
Normal
-0.1
1022
Normal
-0.1
1032
Normal
-0.1
138
Normal
-0.1
394
Normal
-0.1
297
Tumor
-0.1
145
Tumor
-0.1
187
Tumor
-0.1
878
Normal
-0.1
414
Normal
-0.2
813
Tumor
-0.2
428
Normal
-0.2
186
Normal
-0.2
426
Normal
-0.2
914
Normal
-0.2
446
Normal
-0.2
816
Normal
-0.2
465
Tumor
-0.2
352
Normal
-0.2
214
Normal
-0.2
463
Tumor
-0.2
136
Normal
-0.2
391
Tumor
-0.2
1044
Normal
-0.2
722
Normal
-0.2
648
Normal
-0.2
912
Normal
-0.2
132
Normal
-0.2
217
Tumor
-0.2
574
Normal
-0.2
396
Normal
-0.2
466
Normal
-0.2
127
Tumor
-0.2
376
Normal
-0.2
368
Normal
-0.2
162
Normal
-0.2
262
Normal
-0.2
148
Normal
-0.2
298
Normal
-0.2
976
Normal
-0.2
258
Normal
-0.2
882
Normal
-0.2
534
Normal
-0.2
482
Normal
-0.2
468
Normal
-0.2
344
Normal
-0.2
128
Normal
-0.2
232
Normal
-0.2
114
Normal
-0.2
641
Tumor
-0.2
744
Normal
-0.2
435
Tumor
-0.2
196
Normal
-0.2
618
Normal
-0.2
366
Normal
-0.2
222
Normal
-0.3
464
Normal
-0.3
354
Normal
-0.3
642
Normal
-0.3
231
Tumor
-0.3
125
Tumor
-0.3
517
Tumor
-0.3
332
Normal
-0.3
343
Tumor
-0.3
124
Normal
-0.3
341
Tumor
-0.3
452
Normal
-0.3
358
Normal
-0.3
456
Normal
-0.3
171
Tumor
-0.4
342
Normal
-0.4
123
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
