MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.7 nTPM
HPA Brain:24.3 nTPM
GTEx:44.7 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Pig:74.8 nTPM
Mouse:93.5 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.5
2019 Male, age 18, unknown 24.3
2411 Female, age 72, unknown 23.6
2666 Male, age 74, left hemisphere 22.1
1870 Female, age 42, unknown 21.0
1827 Male, age 72, unknown 19.9
1833 Male, age 53, unknown 16.8
2219 Male, age 76, both hemispheres 16.8
2828 Female, age 72, unknown 15.4
1830 Male, age 51, unknown 14.8
2586 Male, age 75, left hemisphere 10.1
Dorsal raphe nucleus
nTPM: 20.8
2298 Female, age 72, unknown 32.5
1828 Male, age 53, unknown 20.6
2750 Male, age 76, both hemispheres 19.5
2047 Male, age 72, unknown 18.1
2016 Female, age 72, unknown 13.3
Inferior colliculus
nTPM: 21.0
2097 Female, age 72, unknown 29.1
1848 Female, age 42, unknown 19.3
1890 Male, age 53, unknown 19.0
2849 Male, age 72, unknown 16.6
Median raphe nucleus
nTPM: 21.3
2220 Male, age 76, midline 21.3
Periaquaductal grey, anterior
nTPM: 19.4
2502 Female, age 75, unknown 22.5
1947 Male, age 18, unknown 19.7
1795 Male, age 51, unknown 15.9
Periaquaductal grey, dorsal
nTPM: 15.5
1840 Male, age 53, unknown 18.8
1831 Male, age 72, unknown 14.5
2464 Female, age 72, unknown 14.5
2850 Male, age 76, both hemispheres 14.1
Periaquaductal grey, lateral
nTPM: 13.4
2272 Male, age 74, both hemispheres 15.9
2053 Male, age 18, unknown 13.1
2140 Male, age 76, both hemispheres 11.1
Pretectal area
nTPM: 21.6
1817 Female, age 42, unknown 29.5
1944 Female, age 72, unknown 29.2
2007 Male, age 72, unknown 28.9
1816 Male, age 51, unknown 28.6
1815 Male, age 53, unknown 23.2
2224 Female, age 72, unknown 21.9
2667 Female, age 75, unknown 19.3
2273 Male, age 74, both hemispheres 18.1
2825 Male, age 18, unknown 15.0
2316 Male, age 76, right hemisphere 13.5
2407 Male, age 75, both hemispheres 10.5
Red nucleus
nTPM: 18.8
1821 Female, age 72, unknown 31.3
2503 Female, age 72, unknown 22.6
2785 Male, age 18, unknown 21.5
1954 Female, age 42, unknown 20.3
1865 Male, age 51, unknown 20.0
2725 Female, age 75, unknown 19.6
2227 Male, age 72, unknown 17.5
1904 Male, age 53, unknown 17.4
2769 Male, age 72, unknown 16.9
2823 Male, age 76, right hemisphere 16.6
2584 Male, age 75, left hemisphere 11.7
2588 Male, age 74, left hemisphere 9.8
Substantia nigra
nTPM: 24.3
1916 Female, age 42, unknown 32.0
2241 Male, age 72, unknown 29.8
1889 Female, age 72, unknown 29.7
2409 Female, age 72, unknown 29.0
1851 Male, age 51, unknown 26.6
1941 Male, age 53, unknown 25.2
2665 Male, age 74, both hemispheres 21.4
2699 Male, age 18, unknown 18.0
2590 Female, age 75, unknown 17.4
2583 Male, age 75, right hemisphere 13.8
Superior colliculus
nTPM: 18.2
2587 Male, age 74, left hemisphere 27.8
1895 Male, age 76, right hemisphere 22.0
2087 Female, age 72, unknown 21.7
2668 Female, age 75, unknown 19.4
1796 Male, age 53, unknown 19.1
2261 Male, age 18, unknown 18.8
1913 Female, age 42, unknown 17.1
1839 Male, age 51, unknown 16.6
1995 Male, age 72, unknown 13.8
2664 Male, age 75, both hemispheres 5.7
Ventral tegmental area
nTPM: 20.8
2410 Female, age 72, unknown 31.2
1915 Female, age 42, unknown 23.5
2218 Male, age 76, both hemispheres 21.4
1942 Male, age 51, unknown 17.4
2223 Female, age 72, unknown 17.3
2021 Male, age 53, unknown 14.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.7
Samples: 139

Max nTPM: 106.0
Min nTPM: 27.3
Std nTPM: 10.9
Median nTPM: 42.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 106.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 92.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 81.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 72.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 70.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 69.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 64.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 63.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 62.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 61.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 58.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.0
FF:10158-103A5 76 years, female 52.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.3
Samples: 4

Max nTPM: 70.4
Min nTPM: 46.6
Sample A Female 70.4
Sample B Female 46.6
Sample C Male 55.7
Sample D Male 48.3
Midbrain
nTPM: 67.9
Samples: 4

Max nTPM: 82.8
Min nTPM: 56.0
Sample A Female 75.5
Sample B Female 57.1
Sample C Male 82.8
Sample D Male 56.0
Periaqueductal gray
nTPM: 49.7
Samples: 3

Max nTPM: 53.2
Min nTPM: 46.3
Sample B Female 49.7
Sample C Male 53.2
Sample D Male 46.3
Superior colliculi
nTPM: 74.8
Samples: 4

Max nTPM: 106.9
Min nTPM: 57.8
Sample A Female 69.6
Sample B Female 57.8
Sample C Male 106.9
Sample D Male 64.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 93.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.6
Samples: 4

Max nTPM: 97.8
Min nTPM: 87.4
Sample A Male 87.4
Sample B Male 96.9
Sample C Female 97.8
Sample D Female 92.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
71723912 Antisense, RP_050921_01_B07, Mouse strain C57BL/6J (56 days, male) 2.0

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