We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCGN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
264.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
132.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
129.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
109.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
107.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
100.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
82.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
82.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
80.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
77.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
71.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
69.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
68.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
67.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
66.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
59.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
58.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
55.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
55.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
54.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
53.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
49.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
46.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
46.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
45.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
34.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
34.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
31.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCGN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
389.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
316.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
230.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
123.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
120.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
99.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
91.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
91.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
64.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
63.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
63.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
62.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
61.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
55.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
52.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
52.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
52.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
46.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
44.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
44.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
43.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
40.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
393
Tumor
3.5
445
Tumor
3.3
1027
Tumor
2.9
277
Tumor
2.2
545
Tumor
2.2
297
Tumor
1.8
737
Tumor
1.8
695
Tumor
1.7
137
Tumor
1.7
777
Tumor
1.5
311
Tumor
1.4
461
Tumor
1.1
357
Tumor
1.1
515
Tumor
1.0
813
Tumor
0.9
211
Tumor
0.9
497
Tumor
0.9
425
Tumor
0.8
131
Tumor
0.8
423
Tumor
0.6
147
Tumor
0.4
527
Tumor
0.4
924
Normal
0.3
925
Tumor
0.3
446
Normal
0.3
392
Normal
0.2
874
Normal
0.2
463
Tumor
0.1
483
Tumor
0.1
953
Tumor
0.1
332
Normal
0.1
278
Normal
0.1
312
Normal
0.0
394
Normal
0.0
313
Tumor
0.0
192
Normal
-0.1
424
Normal
-0.1
388
Normal
-0.1
386
Normal
-0.1
664
Normal
-0.1
283
Tumor
-0.1
666
Normal
-0.1
574
Normal
-0.2
434
Normal
-0.2
443
Tumor
-0.3
128
Normal
-0.3
546
Normal
-0.3
984
Normal
-0.3
188
Normal
-0.3
111
Normal
-0.3
416
Normal
-0.3
222
Normal
-0.3
444
Normal
-0.3
455
Tumor
-0.3
786
Normal
-0.3
966
Normal
-0.3
462
Normal
-0.3
722
Normal
-0.3
426
Normal
-0.3
214
Normal
-0.3
436
Normal
-0.3
968
Normal
-0.3
355
Tumor
-0.3
391
Tumor
-0.4
1013
Tumor
-0.4
478
Normal
-0.4
466
Normal
-0.4
1022
Normal
-0.4
716
Normal
-0.4
366
Normal
-0.4
186
Normal
-0.4
432
Normal
-0.4
414
Normal
-0.5
412
Normal
-0.5
698
Normal
-0.5
196
Normal
-0.5
428
Normal
-0.5
627
Tumor
-0.5
714
Normal
-0.5
534
Normal
-0.5
756
Normal
-0.5
728
Normal
-0.5
228
Normal
-0.5
863
Tumor
-0.5
1032
Normal
-0.5
456
Normal
-0.5
873
Tumor
-0.5
396
Normal
-0.5
172
Normal
-0.6
298
Normal
-0.6
862
Normal
-0.6
696
Normal
-0.6
433
Tumor
-0.6
472
Normal
-0.6
268
Normal
-0.6
572
Normal
-0.6
923
Tumor
-0.6
738
Normal
-0.6
365
Tumor
-0.6
232
Normal
-0.7
384
Normal
-0.7
422
Normal
-0.7
362
Normal
-0.7
742
Normal
-0.7
818
Normal
-0.7
126
Normal
-0.7
851
Tumor
-0.7
745
Tumor
-0.7
132
Normal
-0.7
314
Normal
-0.7
146
Normal
-0.7
492
Normal
-0.7
364
Normal
-0.7
1026
Normal
-0.7
262
Normal
-0.7
474
Normal
-0.7
1046
Normal
-0.7
387
Tumor
-0.7
538
Normal
-0.7
494
Normal
-0.7
148
Normal
-0.8
938
Normal
-0.8
518
Normal
-0.8
484
Normal
-0.8
411
Tumor
-0.8
415
Tumor
-0.8
564
Normal
-0.8
912
Normal
-0.8
356
Normal
-0.8
138
Normal
-0.8
358
Normal
-0.8
142
Normal
-0.8
648
Normal
-0.8
464
Normal
-0.8
514
Normal
-0.8
498
Normal
-0.8
376
Normal
-0.8
918
Normal
-0.8
344
Normal
-0.8
642
Normal
-0.8
816
Normal
-0.8
395
Tumor
-0.9
1044
Normal
-0.9
723
Tumor
-0.9
452
Normal
-0.9
218
Normal
-0.9
1028
Normal
-0.9
615
Tumor
-0.9
448
Normal
-0.9
922
Normal
-0.9
568
Normal
-1.0
976
Normal
-1.0
162
Normal
-1.0
978
Normal
-1.0
616
Normal
-1.0
814
Normal
-1.0
375
Tumor
-1.0
136
Normal
-1.0
944
Normal
-1.0
431
Tumor
-1.0
368
Normal
-1.0
328
Normal
-1.0
721
Tumor
-1.0
272
Normal
-1.0
124
Normal
-1.0
672
Normal
-1.0
956
Normal
-1.0
212
Normal
-1.1
662
Normal
-1.1
882
Normal
-1.1
528
Normal
-1.1
447
Tumor
-1.1
964
Normal
-1.1
352
Normal
-1.1
435
Tumor
-1.1
516
Normal
-1.1
866
Normal
-1.1
663
Tumor
-1.1
488
Normal
-1.1
647
Tumor
-1.1
744
Normal
-1.1
686
Normal
-1.2
554
Normal
-1.2
354
Normal
-1.2
914
Normal
-1.2
217
Tumor
-1.2
916
Normal
-1.2
636
Normal
-1.2
114
Normal
-1.2
778
Normal
-1.2
982
Normal
-1.2
926
Normal
-1.2
385
Tumor
-1.2
482
Normal
-1.2
185
Tumor
-1.2
824
Normal
-1.2
868
Normal
-1.2
341
Tumor
-1.2
884
Normal
-1.2
881
Tumor
-1.2
618
Normal
-1.3
286
Normal
-1.3
671
Tumor
-1.3
558
Normal
-1.3
983
Tumor
-1.3
864
Normal
-1.3
468
Normal
-1.3
224
Normal
-1.3
536
Normal
-1.3
187
Tumor
-1.3
258
Normal
-1.3
427
Tumor
-1.3
524
Normal
-1.4
1042
Normal
-1.4
958
Normal
-1.4
852
Normal
-1.4
213
Tumor
-1.4
513
Tumor
-1.4
413
Tumor
-1.4
351
Tumor
-1.4
746
Normal
-1.4
1045
Tumor
-1.4
331
Tumor
-1.4
1016
Normal
-1.4
535
Tumor
-1.5
526
Normal
-1.5
195
Tumor
-1.5
284
Normal
-1.5
743
Tumor
-1.5
491
Tumor
-1.5
342
Normal
-1.5
171
Tumor
-1.5
363
Tumor
-1.6
628
Normal
-1.6
161
Tumor
-1.6
191
Tumor
-1.6
353
Tumor
-1.6
383
Tumor
-1.6
227
Tumor
-1.6
221
Tumor
-1.6
878
Normal
-1.6
367
Tumor
-1.7
361
Tumor
-1.7
421
Tumor
-1.7
965
Tumor
-1.7
1041
Tumor
-1.8
1025
Tumor
-1.8
123
Tumor
-1.8
271
Tumor
-1.8
537
Tumor
-1.8
713
Tumor
-1.8
1014
Normal
-1.8
493
Tumor
-1.9
954
Normal
-1.9
145
Tumor
-1.9
981
Tumor
-1.9
563
Tumor
-1.9
285
Tumor
-2.0
112
Tumor
-2.0
487
Tumor
-2.0
952
Normal
-2.0
1043
Tumor
-2.0
917
Tumor
-2.0
571
Tumor
-2.0
697
Tumor
-2.0
963
Tumor
-2.1
127
Tumor
-2.1
257
Tumor
-2.1
465
Tumor
-2.1
665
Tumor
-2.1
1021
Tumor
-2.1
975
Tumor
-2.1
1031
Tumor
-2.1
533
Tumor
-2.2
327
Tumor
-2.2
261
Tumor
-2.2
635
Tumor
-2.2
343
Tumor
-2.2
553
Tumor
-2.2
858
Normal
-2.2
451
Tumor
-2.3
231
Tumor
-2.3
467
Tumor
-2.3
481
Tumor
-2.3
883
Tumor
-2.3
141
Tumor
-2.3
755
Tumor
-2.4
785
Tumor
-2.4
715
Tumor
-2.4
557
Tumor
-2.4
135
Tumor
-2.4
943
Tumor
-2.4
741
Tumor
-2.4
1015
Tumor
-2.5
685
Tumor
-2.5
525
Tumor
-2.5
473
Tumor
-2.5
967
Tumor
-2.5
915
Tumor
-2.5
567
Tumor
-2.5
113
Tumor
-2.5
125
Tumor
-2.5
823
Tumor
-2.5
867
Tumor
-2.5
517
Tumor
-2.6
957
Tumor
-2.6
661
Tumor
-2.6
573
Tumor
-2.6
523
Tumor
-2.6
911
Tumor
-2.6
724
Normal
-2.7
877
Tumor
-2.7
267
Tumor
-2.7
977
Tumor
-2.7
223
Tumor
-2.7
641
Tumor
-2.8
913
Tumor
-2.8
477
Tumor
-2.8
727
Tumor
-2.9
617
Tumor
-2.9
857
Tumor
-3.0
921
Tumor
-3.0
471
Tumor
-3.0
861
Tumor
-3.3
865
Tumor
-3.3
955
Tumor
-3.3
817
Tumor
-3.4
815
Tumor
-3.7
937
Tumor
-3.8
951
Tumor
-3.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
