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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
81.2
nTPM
HPA Brain:
52.5
nTPM
GTEx:
81.2
nTPM
FANTOM5:
228.4
Scaled Tags Per Million
Pig:
86.3
nTPM
Mouse:
75.6
nTPM
Allen mouse:
1.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 44.6
2411
Female, age 72, unknown
57.1
1830
Male, age 51, unknown
55.9
1833
Male, age 53, unknown
50.6
1870
Female, age 42, unknown
49.5
2828
Female, age 72, unknown
49.2
1827
Male, age 72, unknown
43.9
2219
Male, age 76, both hemispheres
37.1
2586
Male, age 75, left hemisphere
34.8
2019
Male, age 18, unknown
34.0
2666
Male, age 74, left hemisphere
33.9
Dorsal raphe nucleus nTPM: 48.1
2750
Male, age 76, both hemispheres
62.6
2298
Female, age 72, unknown
50.4
2047
Male, age 72, unknown
46.1
1828
Male, age 53, unknown
41.4
2016
Female, age 72, unknown
39.9
Inferior colliculus nTPM: 41.4
2849
Male, age 72, unknown
48.7
1848
Female, age 42, unknown
45.6
1890
Male, age 53, unknown
36.2
2097
Female, age 72, unknown
35.0
Median raphe nucleus nTPM: 52.5
2220
Male, age 76, midline
52.5
Periaquaductal grey, anterior nTPM: 44.2
1947
Male, age 18, unknown
48.4
1795
Male, age 51, unknown
43.2
2502
Female, age 75, unknown
40.9
Periaquaductal grey, dorsal nTPM: 40.2
2464
Female, age 72, unknown
45.5
2850
Male, age 76, both hemispheres
39.9
1831
Male, age 72, unknown
38.6
1840
Male, age 53, unknown
37.0
Periaquaductal grey, lateral nTPM: 44.2
2053
Male, age 18, unknown
44.5
2272
Male, age 74, both hemispheres
44.1
2140
Male, age 76, both hemispheres
43.8
Pretectal area nTPM: 43.1
2667
Female, age 75, unknown
53.6
2273
Male, age 74, both hemispheres
52.7
2316
Male, age 76, right hemisphere
50.6
2825
Male, age 18, unknown
49.3
2224
Female, age 72, unknown
46.7
2407
Male, age 75, both hemispheres
42.0
1815
Male, age 53, unknown
41.5
1817
Female, age 42, unknown
36.9
2007
Male, age 72, unknown
35.4
1944
Female, age 72, unknown
35.0
1816
Male, age 51, unknown
30.4
Red nucleus nTPM: 43.2
1865
Male, age 51, unknown
53.7
2503
Female, age 72, unknown
46.3
1821
Female, age 72, unknown
46.1
1954
Female, age 42, unknown
45.8
2769
Male, age 72, unknown
45.8
2227
Male, age 72, unknown
44.7
2823
Male, age 76, right hemisphere
42.9
2725
Female, age 75, unknown
42.2
2588
Male, age 74, left hemisphere
41.3
1904
Male, age 53, unknown
39.7
2785
Male, age 18, unknown
39.4
2584
Male, age 75, left hemisphere
31.0
Substantia nigra nTPM: 36.1
1941
Male, age 53, unknown
44.1
2699
Male, age 18, unknown
42.4
1916
Female, age 42, unknown
40.1
1851
Male, age 51, unknown
35.2
2583
Male, age 75, right hemisphere
35.1
2409
Female, age 72, unknown
33.4
2665
Male, age 74, both hemispheres
32.9
1889
Female, age 72, unknown
32.8
2590
Female, age 75, unknown
32.8
2241
Male, age 72, unknown
32.7
Superior colliculus nTPM: 43.7
1913
Female, age 42, unknown
50.4
1839
Male, age 51, unknown
46.6
1995
Male, age 72, unknown
46.2
1895
Male, age 76, right hemisphere
45.3
1796
Male, age 53, unknown
45.1
2587
Male, age 74, left hemisphere
45.0
2668
Female, age 75, unknown
41.3
2087
Female, age 72, unknown
41.0
2261
Male, age 18, unknown
40.2
2664
Male, age 75, both hemispheres
35.5
Ventral tegmental area nTPM: 45.8
2223
Female, age 72, unknown
56.7
2218
Male, age 76, both hemispheres
48.8
2021
Male, age 53, unknown
47.8
2410
Female, age 72, unknown
46.4
1942
Male, age 51, unknown
38.4
1915
Female, age 42, unknown
36.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
81.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 81.2
Samples: 139
Max nTPM: 160.3
Min nTPM: 41.7
Std nTPM: 22.4
Median nTPM: 76.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
160.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
142.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
141.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
133.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
126.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
124.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
122.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
122.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
122.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
121.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
121.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
120.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
116.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
116.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
111.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
111.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
110.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
109.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
108.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
108.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
106.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
105.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
104.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
103.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
102.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
101.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
100.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
100.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
99.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
97.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
97.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
97.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
97.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
96.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
96.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
95.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
95.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
94.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
94.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
93.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
91.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
90.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
88.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
88.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
87.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
86.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
86.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
84.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
83.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
83.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
83.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
82.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
81.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
81.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
81.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
79.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
79.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
79.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
79.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
78.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
78.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
78.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
78.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
78.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
77.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
77.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
77.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
76.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
76.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
76.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
76.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
76.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
75.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
74.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
74.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
73.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
72.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
72.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
72.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
72.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
72.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
72.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
70.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
70.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
70.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
70.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
70.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
69.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
69.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
69.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
69.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
69.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
69.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
69.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
68.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
68.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
68.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
67.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
67.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
66.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
66.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
66.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
65.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
65.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
64.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
64.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
64.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
63.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
63.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
63.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
63.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
63.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
62.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
61.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
61.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
60.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
60.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
60.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
59.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
59.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
58.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
58.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
58.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
57.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
56.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
55.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
55.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
55.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
55.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
54.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
54.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
54.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
53.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
52.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
51.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
48.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
46.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
44.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
41.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
75.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 75.6
Samples: 4
Max nTPM: 80.0
Min nTPM: 69.9
Sample A
Male
80.0
Sample B
Male
76.2
Sample C
Female
69.9
Sample D
Female
76.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.