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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MKNK1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MKNK1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.2
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
64.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
47.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
41.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
36.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
31.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.0
385
Tumor
0.9
647
Tumor
0.9
537
Tumor
0.9
231
Tumor
0.8
686
Normal
0.8
937
Tumor
0.7
713
Tumor
0.7
535
Tumor
0.7
395
Tumor
0.7
1015
Tumor
0.6
343
Tumor
0.6
533
Tumor
0.6
1021
Tumor
0.5
951
Tumor
0.5
467
Tumor
0.5
391
Tumor
0.5
978
Normal
0.5
557
Tumor
0.5
211
Tumor
0.5
714
Normal
0.5
721
Tumor
0.4
851
Tumor
0.4
957
Tumor
0.4
463
Tumor
0.4
571
Tumor
0.4
786
Normal
0.4
663
Tumor
0.4
716
Normal
0.4
488
Normal
0.4
411
Tumor
0.4
943
Tumor
0.4
423
Tumor
0.4
722
Normal
0.4
554
Normal
0.4
925
Tumor
0.4
191
Tumor
0.4
465
Tumor
0.4
698
Normal
0.4
456
Normal
0.4
953
Tumor
0.3
724
Normal
0.3
195
Tumor
0.3
464
Normal
0.3
452
Normal
0.3
665
Tumor
0.3
375
Tumor
0.3
358
Normal
0.3
536
Normal
0.3
367
Tumor
0.3
696
Normal
0.3
482
Normal
0.3
413
Tumor
0.3
311
Tumor
0.3
685
Tumor
0.3
434
Normal
0.3
468
Normal
0.3
224
Normal
0.3
955
Tumor
0.3
451
Tumor
0.3
917
Tumor
0.3
283
Tumor
0.3
286
Normal
0.3
514
Normal
0.3
926
Normal
0.3
498
Normal
0.3
966
Normal
0.3
393
Tumor
0.3
344
Normal
0.3
491
Tumor
0.3
513
Tumor
0.2
755
Tumor
0.2
785
Tumor
0.2
466
Normal
0.2
965
Tumor
0.2
573
Tumor
0.2
351
Tumor
0.2
956
Normal
0.2
217
Tumor
0.2
526
Normal
0.2
352
Normal
0.2
357
Tumor
0.2
448
Normal
0.2
952
Normal
0.2
916
Normal
0.2
355
Tumor
0.2
214
Normal
0.2
196
Normal
0.2
218
Normal
0.2
923
Tumor
0.2
568
Normal
0.2
396
Normal
0.2
484
Normal
0.2
187
Tumor
0.2
447
Tumor
0.2
574
Normal
0.2
365
Tumor
0.2
277
Tumor
0.2
361
Tumor
0.2
387
Tumor
0.2
487
Tumor
0.2
497
Tumor
0.2
213
Tumor
0.1
113
Tumor
0.1
778
Normal
0.1
524
Normal
0.1
363
Tumor
0.1
884
Normal
0.1
432
Normal
0.1
914
Normal
0.1
858
Normal
0.1
627
Tumor
0.1
162
Normal
0.1
428
Normal
0.1
422
Normal
0.1
984
Normal
0.1
148
Normal
0.1
697
Tumor
0.1
137
Tumor
0.1
427
Tumor
0.1
262
Normal
0.1
1026
Normal
0.1
222
Normal
0.1
364
Normal
0.1
356
Normal
0.1
873
Tumor
0.1
545
Tumor
0.1
642
Normal
0.1
1028
Normal
0.1
913
Tumor
0.1
628
Normal
0.1
481
Tumor
0.1
944
Normal
0.1
125
Tumor
0.1
572
Normal
0.1
366
Normal
0.1
494
Normal
0.1
483
Tumor
0.1
636
Normal
0.1
421
Tumor
0.1
186
Normal
0.1
1042
Normal
0.1
1016
Normal
0.1
528
Normal
0.1
492
Normal
0.1
874
Normal
0.1
455
Tumor
0.1
416
Normal
0.1
525
Tumor
0.1
823
Tumor
0.1
564
Normal
0.1
212
Normal
0.1
223
Tumor
0.1
715
Tumor
0.1
353
Tumor
0.1
863
Tumor
0.1
862
Normal
0.1
342
Normal
0.1
883
Tumor
0.0
136
Normal
0.0
538
Normal
0.0
493
Tumor
0.0
111
Normal
0.0
558
Normal
0.0
172
Normal
0.0
815
Tumor
0.0
672
Normal
0.0
444
Normal
0.0
1044
Normal
0.0
852
Normal
0.0
861
Tumor
0.0
128
Normal
0.0
954
Normal
0.0
124
Normal
0.0
912
Normal
0.0
1045
Tumor
0.0
617
Tumor
0.0
864
Normal
0.0
341
Tumor
0.0
981
Tumor
0.0
328
Normal
0.0
616
Normal
0.0
534
Normal
0.0
412
Normal
0.0
228
Normal
0.0
127
Tumor
0.0
1032
Normal
0.0
618
Normal
0.0
922
Normal
0.0
666
Normal
0.0
392
Normal
0.0
126
Normal
0.0
477
Tumor
0.0
376
Normal
0.0
915
Tumor
0.0
814
Normal
0.0
1022
Normal
0.0
192
Normal
0.0
354
Normal
0.0
472
Normal
0.0
478
Normal
0.0
738
Normal
0.0
857
Tumor
0.0
866
Normal
0.0
958
Normal
0.0
516
Normal
0.0
424
Normal
0.0
261
Tumor
0.0
446
Normal
0.0
1041
Tumor
0.0
142
Normal
0.0
474
Normal
0.0
414
Normal
0.0
983
Tumor
0.0
635
Tumor
0.0
662
Normal
-0.1
1013
Tumor
-0.1
967
Tumor
-0.1
284
Normal
-0.1
938
Normal
-0.1
968
Normal
-0.1
185
Tumor
-0.1
112
Tumor
-0.1
278
Normal
-0.1
188
Normal
-0.1
727
Tumor
-0.1
298
Normal
-0.1
415
Tumor
-0.1
386
Normal
-0.1
567
Tumor
-0.1
648
Normal
-0.1
563
Tumor
-0.1
171
Tumor
-0.1
695
Tumor
-0.1
756
Normal
-0.1
473
Tumor
-0.1
777
Tumor
-0.1
546
Normal
-0.1
664
Normal
-0.1
527
Tumor
-0.1
728
Normal
-0.1
362
Normal
-0.1
394
Normal
-0.1
388
Normal
-0.1
161
Tumor
-0.1
313
Tumor
-0.1
865
Tumor
-0.1
817
Tumor
-0.1
878
Normal
-0.1
818
Normal
-0.1
145
Tumor
-0.1
1014
Normal
-0.1
976
Normal
-0.1
433
Tumor
-0.1
963
Tumor
-0.1
461
Tumor
-0.1
671
Tumor
-0.1
641
Tumor
-0.1
518
Normal
-0.1
745
Tumor
-0.1
327
Tumor
-0.1
615
Tumor
-0.1
867
Tumor
-0.1
272
Normal
-0.1
332
Normal
-0.1
312
Normal
-0.1
523
Tumor
-0.1
138
Normal
-0.1
1025
Tumor
-0.1
746
Normal
-0.1
383
Tumor
-0.2
462
Normal
-0.2
964
Normal
-0.2
436
Normal
-0.2
924
Normal
-0.2
384
Normal
-0.2
918
Normal
-0.2
443
Tumor
-0.2
1031
Tumor
-0.2
114
Normal
-0.2
824
Normal
-0.2
744
Normal
-0.2
147
Tumor
-0.2
1046
Normal
-0.2
1027
Tumor
-0.2
868
Normal
-0.2
982
Normal
-0.2
816
Normal
-0.2
426
Normal
-0.2
742
Normal
-0.2
977
Tumor
-0.3
1043
Tumor
-0.3
471
Tumor
-0.3
975
Tumor
-0.3
515
Tumor
-0.3
368
Normal
-0.3
723
Tumor
-0.3
297
Tumor
-0.3
445
Tumor
-0.3
227
Tumor
-0.3
425
Tumor
-0.3
877
Tumor
-0.3
141
Tumor
-0.3
911
Tumor
-0.3
431
Tumor
-0.4
221
Tumor
-0.4
331
Tumor
-0.4
435
Tumor
-0.4
267
Tumor
-0.4
813
Tumor
-0.4
146
Normal
-0.4
123
Tumor
-0.4
314
Normal
-0.4
737
Tumor
-0.4
131
Tumor
-0.5
517
Tumor
-0.5
921
Tumor
-0.5
285
Tumor
-0.5
258
Normal
-0.5
882
Normal
-0.5
271
Tumor
-0.5
132
Normal
-0.5
741
Tumor
-0.5
232
Normal
-0.6
881
Tumor
-0.6
257
Tumor
-0.6
743
Tumor
-0.6
135
Tumor
-0.6
553
Tumor
-0.6
268
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.