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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:61.5 nTPM
HPA Brain:113.3 nTPM
GTEx:61.5 nTPM
FANTOM5:236.5 Scaled Tags Per Million
Pig:25.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 96.2
1981 Female, age 72, midline 110.0
2048 Male, age 55, midline 97.2
2565 Male, age 75, midline 97.0
2816 Male, age 47, midline 89.1
2194 Female, age 79, both hemispheres 87.6
Cervical spinal cord, dorsal horn
nTPM: 113.3
2296 Male, age 66, both hemispheres 134.7
2069 Male, age 47, both hemispheres 127.6
2173 Female, age 72, unknown 123.8
2297 Male, age 75, both hemispheres 105.9
1877 Male, age 55, unknown 101.0
2721 Male, age 90, both hemispheres 86.6
Cervical spinal cord, ventral horn
nTPM: 98.6
2098 Female, age 72, unknown 116.4
2480 Male, age 75, both hemispheres 111.4
2809 Male, age 90, both hemispheres 105.9
2295 Male, age 66, both hemispheres 94.9
2068 Male, age 55, unknown 88.3
2820 Female, age 79, both hemispheres 74.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 61.5
Samples: 159

Max nTPM: 92.2
Min nTPM: 41.1
Std nTPM: 9.6
Median nTPM: 61.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 92.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 87.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 86.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 85.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 83.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 81.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 80.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 79.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 76.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 76.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 75.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 75.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 75.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 75.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 75.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 75.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 74.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 71.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 71.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 71.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 71.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 70.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 70.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 70.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 70.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 70.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 69.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 69.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 69.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 69.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 69.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 69.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 68.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 68.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 68.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 68.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 68.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 67.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 67.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 67.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 67.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 67.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 67.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 67.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 67.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 66.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 66.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 66.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 66.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 66.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 66.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 65.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 65.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 65.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 65.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 65.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 65.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 65.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 64.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 64.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 64.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 63.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 63.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 63.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 63.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 63.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 63.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 63.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 63.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 62.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 62.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 62.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 62.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 62.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 62.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 61.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 61.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 61.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 61.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 61.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 60.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 60.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 60.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 60.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 60.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 60.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 59.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 59.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 59.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 59.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 59.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 59.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 59.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 58.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 58.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 58.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 57.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 57.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 57.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 57.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 57.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 57.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 57.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 57.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 57.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 56.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 56.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 56.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 56.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 56.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 56.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 56.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 56.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 56.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 56.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 55.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 55.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 55.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 55.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 55.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 55.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 54.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 54.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 54.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 53.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 53.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 53.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 53.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 53.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 52.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 52.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 52.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 52.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 52.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 51.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 51.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 51.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 51.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 50.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 50.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 50.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 49.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 49.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 49.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 49.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 48.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 48.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 47.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 47.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 47.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 46.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 46.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 46.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 45.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 45.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 44.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 42.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 41.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 41.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

236.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 236.5
FF:10181-103D1 60 years, female 242.0
FF:10159-103A6 76 years, female 231.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 25.2
Samples: 4

Max nTPM: 29.6
Min nTPM: 22.6
Sample A Female 22.6
Sample B Female 25.9
Sample C Male 29.6
Sample D Male 22.8
Ventral spinal cord
nTPM: 23.7
Samples: 4

Max nTPM: 24.3
Min nTPM: 22.6
Sample A Female 23.9
Sample B Female 24.1
Sample C Male 24.3
Sample D Male 22.6

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