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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THOC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THOC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.8
Number of samples
231
Samples
Sample
Description
TPM
DO23526
0 years, male, NA, stage:3, alive, 1050 days
83.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
60.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
53.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
49.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
44.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
43.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
40.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
39.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
31.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.2
1013
Tumor
1.0
815
Tumor
1.0
313
Tumor
1.0
865
Tumor
1.0
951
Tumor
0.9
527
Tumor
0.9
473
Tumor
0.9
112
Tumor
0.9
411
Tumor
0.8
647
Tumor
0.8
977
Tumor
0.8
685
Tumor
0.8
171
Tumor
0.8
131
Tumor
0.8
431
Tumor
0.8
883
Tumor
0.7
983
Tumor
0.7
285
Tumor
0.7
965
Tumor
0.7
665
Tumor
0.7
277
Tumor
0.7
661
Tumor
0.7
537
Tumor
0.7
743
Tumor
0.7
425
Tumor
0.7
357
Tumor
0.6
1021
Tumor
0.6
695
Tumor
0.6
957
Tumor
0.6
413
Tumor
0.6
967
Tumor
0.6
557
Tumor
0.6
211
Tumor
0.6
545
Tumor
0.6
567
Tumor
0.6
523
Tumor
0.5
463
Tumor
0.5
445
Tumor
0.5
367
Tumor
0.5
385
Tumor
0.5
663
Tumor
0.5
383
Tumor
0.5
1031
Tumor
0.5
727
Tumor
0.5
355
Tumor
0.4
975
Tumor
0.4
881
Tumor
0.4
465
Tumor
0.4
737
Tumor
0.4
925
Tumor
0.4
641
Tumor
0.4
937
Tumor
0.4
953
Tumor
0.4
331
Tumor
0.4
343
Tumor
0.4
963
Tumor
0.4
483
Tumor
0.4
341
Tumor
0.4
427
Tumor
0.4
471
Tumor
0.4
724
Normal
0.4
375
Tumor
0.4
857
Tumor
0.4
627
Tumor
0.4
535
Tumor
0.4
271
Tumor
0.4
873
Tumor
0.4
443
Tumor
0.4
351
Tumor
0.3
231
Tumor
0.3
227
Tumor
0.3
785
Tumor
0.3
671
Tumor
0.3
817
Tumor
0.3
943
Tumor
0.3
813
Tumor
0.3
851
Tumor
0.3
481
Tumor
0.3
433
Tumor
0.3
387
Tumor
0.3
267
Tumor
0.3
185
Tumor
0.3
421
Tumor
0.3
493
Tumor
0.3
1025
Tumor
0.3
395
Tumor
0.3
221
Tumor
0.2
877
Tumor
0.2
161
Tumor
0.2
467
Tumor
0.2
913
Tumor
0.2
861
Tumor
0.2
573
Tumor
0.2
533
Tumor
0.2
513
Tumor
0.2
217
Tumor
0.2
147
Tumor
0.2
283
Tumor
0.2
777
Tumor
0.2
125
Tumor
0.2
923
Tumor
0.2
213
Tumor
0.2
921
Tumor
0.2
515
Tumor
0.2
715
Tumor
0.2
863
Tumor
0.2
917
Tumor
0.2
123
Tumor
0.2
525
Tumor
0.2
455
Tumor
0.1
635
Tumor
0.1
363
Tumor
0.1
721
Tumor
0.1
461
Tumor
0.1
297
Tumor
0.1
447
Tumor
0.1
423
Tumor
0.1
311
Tumor
0.1
517
Tumor
0.1
571
Tumor
0.1
435
Tumor
0.1
814
Normal
0.1
741
Tumor
0.1
135
Tumor
0.1
563
Tumor
0.1
195
Tumor
0.1
191
Tumor
0.0
553
Tumor
0.0
127
Tumor
0.0
697
Tumor
0.0
491
Tumor
0.0
141
Tumor
0.0
1027
Tumor
0.0
1045
Tumor
0.0
487
Tumor
0.0
477
Tumor
0.0
187
Tumor
0.0
451
Tumor
0.0
261
Tumor
0.0
137
Tumor
0.0
1015
Tumor
-0.1
415
Tumor
-0.1
1043
Tumor
-0.1
393
Tumor
-0.1
391
Tumor
-0.1
823
Tumor
-0.1
365
Tumor
-0.1
713
Tumor
-0.1
524
Normal
-0.1
867
Tumor
-0.1
192
Normal
-0.1
482
Normal
-0.1
915
Tumor
-0.1
361
Tumor
-0.1
478
Normal
-0.2
1041
Tumor
-0.2
955
Tumor
-0.2
257
Tumor
-0.2
514
Normal
-0.2
353
Tumor
-0.2
911
Tumor
-0.2
328
Normal
-0.2
113
Tumor
-0.2
745
Tumor
-0.2
536
Normal
-0.2
755
Tumor
-0.2
384
Normal
-0.2
434
Normal
-0.2
223
Tumor
-0.2
538
Normal
-0.2
218
Normal
-0.2
492
Normal
-0.2
516
Normal
-0.2
268
Normal
-0.3
145
Tumor
-0.3
332
Normal
-0.3
444
Normal
-0.3
312
Normal
-0.3
686
Normal
-0.3
696
Normal
-0.3
722
Normal
-0.3
472
Normal
-0.3
142
Normal
-0.3
412
Normal
-0.3
878
Normal
-0.3
526
Normal
-0.3
617
Tumor
-0.3
744
Normal
-0.3
884
Normal
-0.3
456
Normal
-0.3
554
Normal
-0.3
284
Normal
-0.3
918
Normal
-0.3
262
Normal
-0.3
368
Normal
-0.3
534
Normal
-0.3
314
Normal
-0.3
858
Normal
-0.3
272
Normal
-0.3
214
Normal
-0.3
196
Normal
-0.3
298
Normal
-0.3
422
Normal
-0.3
662
Normal
-0.3
912
Normal
-0.3
926
Normal
-0.3
126
Normal
-0.3
916
Normal
-0.3
518
Normal
-0.3
364
Normal
-0.3
327
Tumor
-0.3
716
Normal
-0.3
188
Normal
-0.3
976
Normal
-0.3
954
Normal
-0.3
474
Normal
-0.3
1028
Normal
-0.3
356
Normal
-0.3
344
Normal
-0.4
414
Normal
-0.4
124
Normal
-0.4
981
Tumor
-0.4
466
Normal
-0.4
146
Normal
-0.4
978
Normal
-0.4
922
Normal
-0.4
664
Normal
-0.4
546
Normal
-0.4
222
Normal
-0.4
778
Normal
-0.4
416
Normal
-0.4
528
Normal
-0.4
498
Normal
-0.4
756
Normal
-0.4
138
Normal
-0.4
452
Normal
-0.4
446
Normal
-0.4
938
Normal
-0.4
286
Normal
-0.4
468
Normal
-0.4
278
Normal
-0.4
672
Normal
-0.4
648
Normal
-0.4
462
Normal
-0.4
618
Normal
-0.4
714
Normal
-0.4
636
Normal
-0.4
944
Normal
-0.4
924
Normal
-0.4
882
Normal
-0.4
228
Normal
-0.4
224
Normal
-0.4
824
Normal
-0.4
966
Normal
-0.4
148
Normal
-0.4
136
Normal
-0.4
494
Normal
-0.4
212
Normal
-0.4
388
Normal
-0.4
424
Normal
-0.4
386
Normal
-0.4
956
Normal
-0.4
484
Normal
-0.4
1026
Normal
-0.4
952
Normal
-0.4
964
Normal
-0.4
428
Normal
-0.4
352
Normal
-0.4
376
Normal
-0.4
866
Normal
-0.4
666
Normal
-0.4
628
Normal
-0.4
464
Normal
-0.4
1032
Normal
-0.4
786
Normal
-0.4
984
Normal
-0.4
366
Normal
-0.4
642
Normal
-0.4
358
Normal
-0.4
132
Normal
-0.4
558
Normal
-0.4
426
Normal
-0.4
128
Normal
-0.4
728
Normal
-0.4
162
Normal
-0.4
574
Normal
-0.4
354
Normal
-0.4
232
Normal
-0.4
258
Normal
-0.4
488
Normal
-0.4
186
Normal
-0.4
396
Normal
-0.4
738
Normal
-0.4
362
Normal
-0.5
1016
Normal
-0.5
111
Normal
-0.5
698
Normal
-0.5
958
Normal
-0.5
392
Normal
-0.5
114
Normal
-0.5
982
Normal
-0.5
852
Normal
-0.5
394
Normal
-0.5
914
Normal
-0.5
448
Normal
-0.5
1014
Normal
-0.5
818
Normal
-0.5
968
Normal
-0.5
1042
Normal
-0.5
572
Normal
-0.5
436
Normal
-0.5
1046
Normal
-0.5
742
Normal
-0.5
564
Normal
-0.5
816
Normal
-0.5
1044
Normal
-0.5
874
Normal
-0.5
616
Normal
-0.5
868
Normal
-0.5
723
Tumor
-0.5
432
Normal
-0.5
568
Normal
-0.5
1022
Normal
-0.5
172
Normal
-0.6
342
Normal
-0.6
746
Normal
-0.6
864
Normal
-0.6
862
Normal
-0.6
615
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
