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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VDAC3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
223.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
149.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
146.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
145.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
134.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
132.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
132.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
129.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
127.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
126.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
123.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
123.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
122.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
121.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
114.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
114.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
110.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
109.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
108.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
107.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
107.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
105.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
104.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
103.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
102.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
101.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
101.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
99.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
98.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
95.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
95.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
94.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
94.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
93.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
92.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
90.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
90.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
90.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
88.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
87.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
87.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
87.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
85.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
85.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
85.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
84.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
84.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
83.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
82.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
82.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
81.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
81.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
80.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
80.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
80.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
80.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
80.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
80.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
80.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
79.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
79.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
79.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
79.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
79.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
78.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
78.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
78.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
77.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
77.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
77.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
77.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
77.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
76.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
76.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
76.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
75.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
75.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
75.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
75.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
74.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
73.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
73.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
73.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
72.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
72.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
71.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
71.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
71.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
71.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
70.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
70.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
69.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
69.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
68.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
67.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
66.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
66.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
66.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
66.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
65.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
65.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
65.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
65.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
65.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
65.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
65.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
65.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
65.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
64.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
64.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
64.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
63.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
63.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
62.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
62.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
61.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
61.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
61.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
60.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
60.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
60.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
59.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
59.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
59.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
59.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
59.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
58.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
58.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
58.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
58.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
58.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
58.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
57.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
57.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
57.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
56.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
56.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
56.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
56.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
54.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
54.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
54.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
53.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
53.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
53.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
53.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
53.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
53.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
53.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
53.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
52.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
52.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
52.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
52.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
51.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
51.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
51.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
51.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
50.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
50.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
50.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
49.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
49.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
49.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
48.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
47.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
47.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
47.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
47.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
47.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
46.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
46.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
46.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
45.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
45.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
45.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
45.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
45.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
45.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
44.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
44.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
44.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
44.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
44.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
43.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
43.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
43.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
43.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
42.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
42.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
41.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
41.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
40.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
40.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
40.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
40.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
39.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
39.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
39.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
37.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
36.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
36.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
36.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
36.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
35.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
34.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
34.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
33.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
32.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
31.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
31.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
31.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
30.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
29.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
29.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
27.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VDAC3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
60.4
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
224.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
207.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
157.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
148.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
128.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
127.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
125.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
121.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
119.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
119.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
116.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
115.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
114.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
113.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
112.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
111.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
110.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
109.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
109.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
107.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
105.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
102.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
98.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
96.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
95.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
93.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
92.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
92.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
91.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
90.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
90.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
90.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
89.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
88.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
87.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
86.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
86.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
85.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
85.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
85.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
84.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
83.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
83.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
82.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
82.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
82.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
80.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
79.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
79.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
78.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
78.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
77.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
76.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
76.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
76.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
76.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
75.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
75.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
75.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
74.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
73.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
73.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
72.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
72.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
72.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
71.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
71.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
71.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
71.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
70.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
69.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
69.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
68.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
68.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
68.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
68.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
68.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
68.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
68.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
67.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
67.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
67.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
66.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
66.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
66.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
66.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
64.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
64.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
63.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
63.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
63.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
62.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
62.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
61.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
61.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
61.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
61.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
60.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
60.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
59.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
59.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
58.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
58.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
58.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
58.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
57.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
56.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
56.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
55.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
54.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
54.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
54.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
54.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
54.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
53.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
53.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
53.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
52.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
52.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
52.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
52.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
51.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
51.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
51.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
50.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
50.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
50.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
50.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
49.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
49.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
49.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
48.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
48.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
48.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
47.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
47.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
47.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
46.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
45.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
45.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
45.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
44.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
44.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
44.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
43.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
43.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
43.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
43.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
42.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
41.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
41.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
41.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
41.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
40.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
40.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
40.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
39.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
39.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
38.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
38.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
38.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
37.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
37.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
37.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
36.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
34.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
34.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
33.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
32.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
31.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.6
627
Tumor
1.5
641
Tumor
1.3
231
Tumor
1.1
1027
Tumor
1.1
443
Tumor
1.0
221
Tumor
0.9
1025
Tumor
0.9
113
Tumor
0.8
911
Tumor
0.8
635
Tumor
0.8
513
Tumor
0.7
685
Tumor
0.7
713
Tumor
0.7
925
Tumor
0.7
191
Tumor
0.7
883
Tumor
0.7
477
Tumor
0.6
451
Tumor
0.6
873
Tumor
0.6
571
Tumor
0.6
145
Tumor
0.6
865
Tumor
0.5
915
Tumor
0.5
615
Tumor
0.5
227
Tumor
0.5
1045
Tumor
0.5
423
Tumor
0.5
465
Tumor
0.5
1043
Tumor
0.5
697
Tumor
0.4
981
Tumor
0.4
471
Tumor
0.4
361
Tumor
0.4
1013
Tumor
0.4
411
Tumor
0.4
127
Tumor
0.4
851
Tumor
0.4
921
Tumor
0.3
573
Tumor
0.3
223
Tumor
0.3
313
Tumor
0.3
491
Tumor
0.3
161
Tumor
0.3
727
Tumor
0.3
525
Tumor
0.3
523
Tumor
0.3
383
Tumor
0.3
975
Tumor
0.3
473
Tumor
0.3
393
Tumor
0.2
755
Tumor
0.2
365
Tumor
0.2
957
Tumor
0.2
112
Tumor
0.2
743
Tumor
0.2
636
Normal
0.2
861
Tumor
0.2
665
Tumor
0.2
537
Tumor
0.2
277
Tumor
0.2
363
Tumor
0.2
1031
Tumor
0.2
137
Tumor
0.2
257
Tumor
0.2
497
Tumor
0.2
385
Tumor
0.2
435
Tumor
0.2
863
Tumor
0.2
553
Tumor
0.2
436
Normal
0.1
527
Tumor
0.1
452
Normal
0.1
823
Tumor
0.1
535
Tumor
0.1
824
Normal
0.1
427
Tumor
0.1
463
Tumor
0.1
951
Tumor
0.1
868
Normal
0.1
128
Normal
0.1
448
Normal
0.1
564
Normal
0.1
461
Tumor
0.1
618
Normal
0.1
147
Tumor
0.1
882
Normal
0.1
415
Tumor
0.1
425
Tumor
0.1
616
Normal
0.1
123
Tumor
0.1
328
Normal
0.1
214
Normal
0.0
642
Normal
0.0
196
Normal
0.0
864
Normal
0.0
912
Normal
0.0
356
Normal
0.0
332
Normal
0.0
695
Tumor
0.0
468
Normal
0.0
567
Tumor
0.0
376
Normal
0.0
391
Tumor
0.0
816
Normal
0.0
648
Normal
0.0
572
Normal
0.0
314
Normal
0.0
878
Normal
0.0
412
Normal
0.0
914
Normal
0.0
466
Normal
0.0
984
Normal
0.0
432
Normal
0.0
464
Normal
0.0
785
Tumor
0.0
813
Tumor
0.0
232
Normal
0.0
488
Normal
0.0
278
Normal
0.0
884
Normal
0.0
738
Normal
0.0
462
Normal
0.0
487
Tumor
0.0
1014
Normal
0.0
815
Tumor
0.0
228
Normal
0.0
1041
Tumor
0.0
284
Normal
0.0
922
Normal
0.0
424
Normal
0.0
222
Normal
0.0
746
Normal
0.0
1026
Normal
0.0
483
Tumor
0.0
494
Normal
0.0
744
Normal
0.0
628
Normal
0.0
331
Tumor
0.0
937
Tumor
0.0
817
Tumor
0.0
224
Normal
0.0
862
Normal
0.0
852
Normal
0.0
172
Normal
0.0
212
Normal
0.0
534
Normal
0.0
416
Normal
0.0
258
Normal
0.0
362
Normal
0.0
741
Tumor
0.0
786
Normal
-0.1
722
Normal
-0.1
724
Normal
-0.1
563
Tumor
-0.1
881
Tumor
-0.1
728
Normal
-0.1
384
Normal
-0.1
262
Normal
-0.1
493
Tumor
-0.1
866
Normal
-0.1
422
Normal
-0.1
526
Normal
-0.1
1015
Tumor
-0.1
414
Normal
-0.1
142
Normal
-0.1
428
Normal
-0.1
742
Normal
-0.1
474
Normal
-0.1
327
Tumor
-0.1
558
Normal
-0.1
916
Normal
-0.1
515
Tumor
-0.1
568
Normal
-0.1
132
Normal
-0.1
138
Normal
-0.1
546
Normal
-0.1
195
Tumor
-0.1
867
Tumor
-0.1
1028
Normal
-0.1
955
Tumor
-0.1
517
Tumor
-0.1
617
Tumor
-0.1
663
Tumor
-0.1
1032
Normal
-0.1
698
Normal
-0.1
662
Normal
-0.1
482
Normal
-0.1
978
Normal
-0.1
982
Normal
-0.1
286
Normal
-0.1
1022
Normal
-0.1
944
Normal
-0.1
136
Normal
-0.1
723
Tumor
-0.1
148
Normal
-0.1
518
Normal
-0.1
516
Normal
-0.1
952
Normal
-0.1
135
Tumor
-0.1
472
Normal
-0.1
924
Normal
-0.1
111
Normal
-0.1
554
Normal
-0.1
162
Normal
-0.1
446
Normal
-0.1
268
Normal
-0.1
364
Normal
-0.1
923
Tumor
-0.1
818
Normal
-0.1
874
Normal
-0.1
484
Normal
-0.1
756
Normal
-0.1
918
Normal
-0.1
456
Normal
-0.1
366
Normal
-0.1
467
Tumor
-0.1
686
Normal
-0.1
354
Normal
-0.1
355
Tumor
-0.1
131
Tumor
-0.1
272
Normal
-0.1
954
Normal
-0.1
434
Normal
-0.1
664
Normal
-0.1
1044
Normal
-0.1
737
Tumor
-0.1
261
Tumor
-0.1
213
Tumor
-0.2
557
Tumor
-0.2
968
Normal
-0.2
431
Tumor
-0.2
413
Tumor
-0.2
966
Normal
-0.2
125
Tumor
-0.2
1016
Normal
-0.2
298
Normal
-0.2
358
Normal
-0.2
344
Normal
-0.2
481
Tumor
-0.2
574
Normal
-0.2
342
Normal
-0.2
1046
Normal
-0.2
858
Normal
-0.2
478
Normal
-0.2
666
Normal
-0.2
524
Normal
-0.2
368
Normal
-0.2
528
Normal
-0.2
455
Tumor
-0.2
492
Normal
-0.2
857
Tumor
-0.2
514
Normal
-0.2
538
Normal
-0.2
956
Normal
-0.2
444
Normal
-0.2
778
Normal
-0.2
352
Normal
-0.2
977
Tumor
-0.2
426
Normal
-0.2
312
Normal
-0.2
1042
Normal
-0.2
267
Tumor
-0.2
696
Normal
-0.2
716
Normal
-0.2
218
Normal
-0.2
375
Tumor
-0.2
367
Tumor
-0.2
126
Normal
-0.2
187
Tumor
-0.2
926
Normal
-0.2
114
Normal
-0.2
186
Normal
-0.2
938
Normal
-0.3
814
Normal
-0.3
976
Normal
-0.3
671
Tumor
-0.3
913
Tumor
-0.3
124
Normal
-0.3
192
Normal
-0.3
146
Normal
-0.3
421
Tumor
-0.3
388
Normal
-0.3
271
Tumor
-0.3
917
Tumor
-0.3
964
Normal
-0.3
714
Normal
-0.3
188
Normal
-0.3
533
Tumor
-0.3
672
Normal
-0.3
498
Normal
-0.3
447
Tumor
-0.3
394
Normal
-0.3
396
Normal
-0.3
141
Tumor
-0.3
433
Tumor
-0.4
958
Normal
-0.4
392
Normal
-0.4
877
Tumor
-0.4
967
Tumor
-0.4
536
Normal
-0.4
185
Tumor
-0.4
297
Tumor
-0.4
217
Tumor
-0.4
943
Tumor
-0.4
386
Normal
-0.4
353
Tumor
-0.4
311
Tumor
-0.5
715
Tumor
-0.5
211
Tumor
-0.5
395
Tumor
-0.5
1021
Tumor
-0.5
387
Tumor
-0.5
963
Tumor
-0.5
721
Tumor
-0.5
965
Tumor
-0.5
341
Tumor
-0.5
343
Tumor
-0.5
953
Tumor
-0.6
983
Tumor
-0.6
171
Tumor
-0.6
351
Tumor
-0.6
285
Tumor
-0.7
647
Tumor
-0.7
357
Tumor
-0.7
777
Tumor
-0.7
661
Tumor
-0.8
445
Tumor
-0.8
283
Tumor
-0.8
545
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
