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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
86.7
nTPM
HPA Brain:
78.2
nTPM
GTEx:
86.7
nTPM
FANTOM5:
57.1
Scaled Tags Per Million
Pig:
32.6
nTPM
Mouse:
124.8
nTPM
Allen mouse:
2.1
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 45.3
2019
Male, age 18, unknown
71.2
1833
Male, age 53, unknown
63.7
2666
Male, age 74, left hemisphere
52.9
1870
Female, age 42, unknown
50.6
1830
Male, age 51, unknown
49.0
2219
Male, age 76, both hemispheres
45.3
2828
Female, age 72, unknown
41.9
2411
Female, age 72, unknown
36.2
1827
Male, age 72, unknown
35.3
2586
Male, age 75, left hemisphere
7.2
Dorsal raphe nucleus nTPM: 40.2
2750
Male, age 76, both hemispheres
51.7
2016
Female, age 72, unknown
42.0
2298
Female, age 72, unknown
40.8
1828
Male, age 53, unknown
38.9
2047
Male, age 72, unknown
27.5
Inferior colliculus nTPM: 44.7
2097
Female, age 72, unknown
59.2
1848
Female, age 42, unknown
44.4
1890
Male, age 53, unknown
43.9
2849
Male, age 72, unknown
31.4
Median raphe nucleus nTPM: 34.1
2220
Male, age 76, midline
34.1
Periaquaductal grey, anterior nTPM: 42.5
2502
Female, age 75, unknown
70.0
1947
Male, age 18, unknown
35.5
1795
Male, age 51, unknown
22.0
Periaquaductal grey, dorsal nTPM: 31.1
2464
Female, age 72, unknown
45.5
1831
Male, age 72, unknown
33.8
2850
Male, age 76, both hemispheres
25.2
1840
Male, age 53, unknown
19.9
Periaquaductal grey, lateral nTPM: 32.1
2272
Male, age 74, both hemispheres
40.9
2053
Male, age 18, unknown
34.6
2140
Male, age 76, both hemispheres
20.7
Pretectal area nTPM: 44.4
1817
Female, age 42, unknown
66.9
2007
Male, age 72, unknown
60.5
1815
Male, age 53, unknown
54.4
1944
Female, age 72, unknown
52.5
1816
Male, age 51, unknown
47.9
2667
Female, age 75, unknown
46.4
2316
Male, age 76, right hemisphere
43.0
2273
Male, age 74, both hemispheres
36.7
2224
Female, age 72, unknown
36.2
2825
Male, age 18, unknown
27.0
2407
Male, age 75, both hemispheres
16.3
Red nucleus nTPM: 78.2
1954
Female, age 42, unknown
129.3
1904
Male, age 53, unknown
120.5
1821
Female, age 72, unknown
111.1
2823
Male, age 76, right hemisphere
111.1
2503
Female, age 72, unknown
92.4
1865
Male, age 51, unknown
86.5
2785
Male, age 18, unknown
69.0
2227
Male, age 72, unknown
68.1
2769
Male, age 72, unknown
66.2
2725
Female, age 75, unknown
32.4
2588
Male, age 74, left hemisphere
30.2
2584
Male, age 75, left hemisphere
21.5
Substantia nigra nTPM: 41.5
2665
Male, age 74, both hemispheres
81.9
1889
Female, age 72, unknown
52.1
2241
Male, age 72, unknown
51.6
1851
Male, age 51, unknown
38.3
2409
Female, age 72, unknown
37.5
2590
Female, age 75, unknown
35.7
1916
Female, age 42, unknown
33.6
1941
Male, age 53, unknown
33.5
2699
Male, age 18, unknown
29.0
2583
Male, age 75, right hemisphere
21.3
Superior colliculus nTPM: 42.4
1895
Male, age 76, right hemisphere
67.5
1913
Female, age 42, unknown
55.3
2087
Female, age 72, unknown
55.0
2587
Male, age 74, left hemisphere
44.4
2668
Female, age 75, unknown
43.3
2261
Male, age 18, unknown
42.5
1995
Male, age 72, unknown
41.4
1839
Male, age 51, unknown
39.3
1796
Male, age 53, unknown
25.6
2664
Male, age 75, both hemispheres
10.1
Ventral tegmental area nTPM: 35.6
2410
Female, age 72, unknown
45.5
2223
Female, age 72, unknown
41.0
2218
Male, age 76, both hemispheres
35.3
1942
Male, age 51, unknown
33.8
1915
Female, age 42, unknown
33.2
2021
Male, age 53, unknown
24.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
86.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 86.7
Samples: 139
Max nTPM: 273.8
Min nTPM: 17.9
Std nTPM: 44.4
Median nTPM: 73.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
273.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
233.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
209.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
190.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
190.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
188.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
173.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
167.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
165.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
165.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
160.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
156.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
155.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
153.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
147.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
142.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
141.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
140.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
136.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
136.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
130.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
128.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
127.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
126.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
123.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
123.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
122.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
120.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
119.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
119.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
118.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
115.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
113.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
111.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
110.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
108.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
107.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
107.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
107.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
106.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
105.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
103.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
101.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
96.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
95.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
95.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
92.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
91.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
90.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
90.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
87.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
87.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
86.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
81.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
81.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
81.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
80.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
78.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
77.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
77.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
77.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
77.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
76.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
75.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
75.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
75.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
75.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
75.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
75.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
73.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
73.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
73.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
71.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
71.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
70.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
69.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
69.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
69.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
68.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
68.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
68.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
67.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
66.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
66.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
66.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
65.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
65.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
64.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
64.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
63.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
63.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
62.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
62.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
62.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
62.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
60.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
60.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
60.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
59.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
58.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
58.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
57.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
57.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
57.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
56.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
56.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
56.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
55.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
54.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
53.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
53.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
51.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
51.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
51.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
50.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
50.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
49.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
49.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
48.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
48.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
47.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
45.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
44.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
43.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
43.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
43.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
41.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
39.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
39.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
38.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
37.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
37.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
34.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
33.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
30.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
29.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
27.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
24.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
17.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
124.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 124.8
Samples: 4
Max nTPM: 132.5
Min nTPM: 119.4
Sample A
Male
132.5
Sample B
Male
126.9
Sample C
Female
119.4
Sample D
Female
120.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.