MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.2 nTPM
HPA Brain:9.2 nTPM
GTEx:15.2 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:2.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 9.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.3
2666 Male, age 74, left hemisphere 17.2
2828 Female, age 72, unknown 8.9
1830 Male, age 51, unknown 8.1
2411 Female, age 72, unknown 7.2
1833 Male, age 53, unknown 6.8
1827 Male, age 72, unknown 5.7
1870 Female, age 42, unknown 5.3
2019 Male, age 18, unknown 5.1
2586 Male, age 75, left hemisphere 4.4
2219 Male, age 76, both hemispheres 3.7
Dorsal raphe nucleus
nTPM: 6.7
2750 Male, age 76, both hemispheres 9.8
1828 Male, age 53, unknown 7.1
2047 Male, age 72, unknown 6.8
2016 Female, age 72, unknown 5.8
2298 Female, age 72, unknown 4.2
Inferior colliculus
nTPM: 6.0
1890 Male, age 53, unknown 7.7
1848 Female, age 42, unknown 5.9
2849 Male, age 72, unknown 5.5
2097 Female, age 72, unknown 4.8
Median raphe nucleus
nTPM: 6.1
2220 Male, age 76, midline 6.1
Periaquaductal grey, anterior
nTPM: 6.9
1947 Male, age 18, unknown 9.2
2502 Female, age 75, unknown 7.1
1795 Male, age 51, unknown 4.5
Periaquaductal grey, dorsal
nTPM: 5.9
2850 Male, age 76, both hemispheres 7.5
1831 Male, age 72, unknown 6.8
2464 Female, age 72, unknown 5.0
1840 Male, age 53, unknown 4.1
Periaquaductal grey, lateral
nTPM: 5.7
2053 Male, age 18, unknown 7.0
2140 Male, age 76, both hemispheres 6.6
2272 Male, age 74, both hemispheres 3.6
Pretectal area
nTPM: 5.6
1817 Female, age 42, unknown 8.0
1944 Female, age 72, unknown 7.4
2316 Male, age 76, right hemisphere 7.0
1816 Male, age 51, unknown 6.7
2825 Male, age 18, unknown 6.6
2007 Male, age 72, unknown 6.4
1815 Male, age 53, unknown 6.3
2224 Female, age 72, unknown 4.0
2667 Female, age 75, unknown 4.0
2273 Male, age 74, both hemispheres 2.9
2407 Male, age 75, both hemispheres 2.2
Red nucleus
nTPM: 9.2
2823 Male, age 76, right hemisphere 17.4
2588 Male, age 74, left hemisphere 11.6
1821 Female, age 72, unknown 11.5
1865 Male, age 51, unknown 9.2
1904 Male, age 53, unknown 8.7
2227 Male, age 72, unknown 8.4
2769 Male, age 72, unknown 8.1
1954 Female, age 42, unknown 7.9
2503 Female, age 72, unknown 7.6
2725 Female, age 75, unknown 7.5
2584 Male, age 75, left hemisphere 7.3
2785 Male, age 18, unknown 5.6
Substantia nigra
nTPM: 7.3
2665 Male, age 74, both hemispheres 13.6
2241 Male, age 72, unknown 8.8
2590 Female, age 75, unknown 8.8
1889 Female, age 72, unknown 8.1
1851 Male, age 51, unknown 7.2
1941 Male, age 53, unknown 5.8
1916 Female, age 42, unknown 5.6
2699 Male, age 18, unknown 5.1
2409 Female, age 72, unknown 4.8
2583 Male, age 75, right hemisphere 4.8
Superior colliculus
nTPM: 5.8
2087 Female, age 72, unknown 8.4
1895 Male, age 76, right hemisphere 8.3
2261 Male, age 18, unknown 6.9
2587 Male, age 74, left hemisphere 6.6
2668 Female, age 75, unknown 6.3
1839 Male, age 51, unknown 5.4
1796 Male, age 53, unknown 5.0
1913 Female, age 42, unknown 4.3
1995 Male, age 72, unknown 4.1
2664 Male, age 75, both hemispheres 2.3
Ventral tegmental area
nTPM: 6.2
2218 Male, age 76, both hemispheres 8.1
2021 Male, age 53, unknown 6.7
1915 Female, age 42, unknown 5.9
2410 Female, age 72, unknown 5.9
1942 Male, age 51, unknown 5.6
2223 Female, age 72, unknown 5.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.2
Samples: 139

Max nTPM: 194.4
Min nTPM: 1.4
Std nTPM: 20.6
Median nTPM: 8.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 194.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 75.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 57.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 55.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 54.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 53.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 50.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 46.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 42.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 38.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.0
FF:10158-103A5 76 years, female 15.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 3.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.7
Samples: 4

Max nTPM: 7.1
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 7.1
Sample C Male 1.9
Sample D Male 4.0
Midbrain
nTPM: 2.0
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.5
Sample A Female 1.8
Sample B Female 2.3
Sample C Male 2.5
Sample D Male 1.5
Periaqueductal gray
nTPM: 1.1
Samples: 3

Max nTPM: 1.9
Min nTPM: 0.7
Sample B Female 1.9
Sample C Male 0.8
Sample D Male 0.7
Superior colliculi
nTPM: 2.5
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.8
Sample A Female 2.6
Sample B Female 2.7
Sample C Male 1.8
Sample D Male 2.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.4
Sample A Male 2.7
Sample B Male 2.4
Sample C Female 3.1
Sample D Female 3.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71763759 Antisense, RP_050921_02_F03, Mouse strain C57BL/6J (56 days, male) 0.0

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