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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2K is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
39.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
35.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2K is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.3
Number of samples
231
Samples
Sample
Description
TPM
DO45213
0 years, male, NA, stage:1, alive, 1200 days
90.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
79.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
62.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
48.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
43.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
35.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
33.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
29.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
0.9
745
Tumor
0.9
285
Tumor
0.8
813
Tumor
0.8
351
Tumor
0.7
921
Tumor
0.6
391
Tumor
0.6
967
Tumor
0.6
743
Tumor
0.6
1043
Tumor
0.6
463
Tumor
0.5
671
Tumor
0.5
923
Tumor
0.5
471
Tumor
0.5
123
Tumor
0.5
661
Tumor
0.5
145
Tumor
0.5
1021
Tumor
0.4
727
Tumor
0.4
863
Tumor
0.4
517
Tumor
0.4
665
Tumor
0.4
877
Tumor
0.4
135
Tumor
0.4
641
Tumor
0.4
297
Tumor
0.4
865
Tumor
0.4
227
Tumor
0.4
635
Tumor
0.4
343
Tumor
0.3
571
Tumor
0.3
1022
Normal
0.3
513
Tumor
0.3
515
Tumor
0.3
221
Tumor
0.3
943
Tumor
0.3
358
Normal
0.3
186
Normal
0.3
1013
Tumor
0.3
436
Normal
0.3
814
Normal
0.3
737
Tumor
0.3
723
Tumor
0.3
1027
Tumor
0.3
342
Normal
0.3
746
Normal
0.3
277
Tumor
0.3
313
Tumor
0.3
881
Tumor
0.3
873
Tumor
0.3
1045
Tumor
0.3
1026
Normal
0.2
431
Tumor
0.2
862
Normal
0.2
817
Tumor
0.2
1031
Tumor
0.2
462
Normal
0.2
713
Tumor
0.2
742
Normal
0.2
411
Tumor
0.2
724
Normal
0.2
367
Tumor
0.2
523
Tumor
0.2
432
Normal
0.2
363
Tumor
0.2
271
Tumor
0.2
617
Tumor
0.2
422
Normal
0.2
392
Normal
0.2
965
Tumor
0.2
715
Tumor
0.2
527
Tumor
0.2
983
Tumor
0.2
394
Normal
0.2
911
Tumor
0.2
482
Normal
0.2
223
Tumor
0.2
414
Normal
0.2
537
Tumor
0.2
823
Tumor
0.2
618
Normal
0.2
131
Tumor
0.2
162
Normal
0.2
484
Normal
0.2
666
Normal
0.2
858
Normal
0.2
451
Tumor
0.2
518
Normal
0.2
286
Normal
0.1
456
Normal
0.1
567
Tumor
0.1
662
Normal
0.1
616
Normal
0.1
446
Normal
0.1
648
Normal
0.1
468
Normal
0.1
663
Tumor
0.1
1016
Normal
0.1
786
Normal
0.1
356
Normal
0.1
824
Normal
0.1
716
Normal
0.1
112
Tumor
0.1
466
Normal
0.1
354
Normal
0.1
818
Normal
0.1
428
Normal
0.1
146
Normal
0.1
866
Normal
0.1
172
Normal
0.1
385
Tumor
0.1
424
Normal
0.1
514
Normal
0.1
464
Normal
0.1
951
Tumor
0.1
738
Normal
0.1
366
Normal
0.1
628
Normal
0.1
148
Normal
0.1
328
Normal
0.1
393
Tumor
0.1
516
Normal
0.1
1046
Normal
0.1
642
Normal
0.1
868
Normal
0.1
696
Normal
0.1
412
Normal
0.1
435
Tumor
0.1
528
Normal
0.1
386
Normal
0.1
545
Tumor
0.1
698
Normal
0.1
341
Tumor
0.1
664
Normal
0.1
627
Tumor
0.1
452
Normal
0.1
472
Normal
0.1
111
Normal
0.1
1042
Normal
0.1
1014
Normal
0.1
353
Tumor
0.1
448
Normal
0.1
714
Normal
0.1
132
Normal
0.1
314
Normal
0.1
136
Normal
0.1
298
Normal
0.1
443
Tumor
0.1
968
Normal
0.1
481
Tumor
0.1
388
Normal
0.1
127
Tumor
0.1
416
Normal
0.1
982
Normal
0.1
212
Normal
0.1
188
Normal
0.1
728
Normal
0.1
952
Normal
0.1
433
Tumor
0.1
882
Normal
0.1
815
Tumor
0.1
964
Normal
0.1
636
Normal
0.1
362
Normal
0.1
114
Normal
0.0
283
Tumor
0.0
573
Tumor
0.0
756
Normal
0.0
113
Tumor
0.0
455
Tumor
0.0
778
Normal
0.0
944
Normal
0.0
924
Normal
0.0
196
Normal
0.0
426
Normal
0.0
867
Tumor
0.0
161
Tumor
0.0
563
Tumor
0.0
1032
Normal
0.0
344
Normal
0.0
497
Tumor
0.0
222
Normal
0.0
912
Normal
0.0
914
Normal
0.0
278
Normal
0.0
755
Tumor
0.0
376
Normal
0.0
365
Tumor
0.0
966
Normal
0.0
128
Normal
0.0
352
Normal
0.0
137
Tumor
0.0
568
Normal
0.0
421
Tumor
0.0
922
Normal
0.0
864
Normal
0.0
361
Tumor
0.0
124
Normal
0.0
526
Normal
0.0
918
Normal
0.0
228
Normal
0.0
327
Tumor
0.0
874
Normal
0.0
434
Normal
0.0
857
Tumor
0.0
884
Normal
0.0
977
Tumor
0.0
368
Normal
0.0
447
Tumor
0.0
938
Normal
0.0
272
Normal
0.0
138
Normal
0.0
488
Normal
0.0
564
Normal
0.0
213
Tumor
0.0
975
Tumor
0.0
615
Tumor
0.0
534
Normal
0.0
171
Tumor
0.0
976
Normal
0.0
262
Normal
0.0
557
Tumor
0.0
915
Tumor
0.0
956
Normal
0.0
125
Tumor
0.0
232
Normal
0.0
1041
Tumor
0.0
477
Tumor
0.0
647
Tumor
0.0
686
Normal
0.0
816
Normal
0.0
218
Normal
-0.1
926
Normal
-0.1
722
Normal
-0.1
1028
Normal
-0.1
978
Normal
-0.1
284
Normal
-0.1
546
Normal
-0.1
493
Tumor
-0.1
957
Tumor
-0.1
312
Normal
-0.1
958
Normal
-0.1
574
Normal
-0.1
332
Normal
-0.1
258
Normal
-0.1
331
Tumor
-0.1
487
Tumor
-0.1
984
Normal
-0.1
126
Normal
-0.1
142
Normal
-0.1
257
Tumor
-0.1
364
Normal
-0.1
981
Tumor
-0.1
415
Tumor
-0.1
425
Tumor
-0.1
852
Normal
-0.1
474
Normal
-0.1
498
Normal
-0.1
1044
Normal
-0.1
861
Tumor
-0.1
267
Tumor
-0.1
955
Tumor
-0.1
721
Tumor
-0.1
396
Normal
-0.1
384
Normal
-0.1
572
Normal
-0.1
554
Normal
-0.1
492
Normal
-0.1
878
Normal
-0.1
192
Normal
-0.1
478
Normal
-0.1
195
Tumor
-0.1
375
Tumor
-0.1
211
Tumor
-0.1
214
Normal
-0.1
744
Normal
-0.1
553
Tumor
-0.1
785
Tumor
-0.1
467
Tumor
-0.1
311
Tumor
-0.2
697
Tumor
-0.2
1015
Tumor
-0.2
851
Tumor
-0.2
937
Tumor
-0.2
217
Tumor
-0.2
141
Tumor
-0.2
524
Normal
-0.2
261
Tumor
-0.2
672
Normal
-0.2
185
Tumor
-0.2
147
Tumor
-0.2
917
Tumor
-0.2
231
Tumor
-0.2
444
Normal
-0.2
494
Normal
-0.2
224
Normal
-0.2
413
Tumor
-0.2
558
Normal
-0.2
916
Normal
-0.2
461
Tumor
-0.2
423
Tumor
-0.2
395
Tumor
-0.2
535
Tumor
-0.2
954
Normal
-0.2
383
Tumor
-0.2
268
Normal
-0.2
913
Tumor
-0.3
445
Tumor
-0.3
355
Tumor
-0.3
536
Normal
-0.3
777
Tumor
-0.3
187
Tumor
-0.3
525
Tumor
-0.3
483
Tumor
-0.3
191
Tumor
-0.3
427
Tumor
-0.3
925
Tumor
-0.3
741
Tumor
-0.3
465
Tumor
-0.3
538
Normal
-0.3
491
Tumor
-0.4
963
Tumor
-0.4
473
Tumor
-0.4
357
Tumor
-0.4
387
Tumor
-0.4
883
Tumor
-0.5
695
Tumor
-0.6
685
Tumor
-0.6
533
Tumor
-0.6
953
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
