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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.7
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
737
Tumor
1.6
443
Tumor
1.5
1027
Tumor
1.2
425
Tumor
1.2
617
Tumor
0.8
497
Tumor
0.8
363
Tumor
0.8
823
Tumor
0.7
223
Tumor
0.7
745
Tumor
0.7
977
Tumor
0.6
427
Tumor
0.6
957
Tumor
0.6
525
Tumor
0.6
813
Tumor
0.6
923
Tumor
0.6
375
Tumor
0.6
431
Tumor
0.5
112
Tumor
0.5
635
Tumor
0.5
421
Tumor
0.5
527
Tumor
0.5
471
Tumor
0.4
545
Tumor
0.4
1028
Normal
0.4
951
Tumor
0.4
463
Tumor
0.4
257
Tumor
0.4
975
Tumor
0.4
395
Tumor
0.4
1045
Tumor
0.4
355
Tumor
0.4
967
Tumor
0.3
492
Normal
0.3
147
Tumor
0.3
538
Normal
0.3
943
Tumor
0.3
477
Tumor
0.3
367
Tumor
0.3
952
Normal
0.3
817
Tumor
0.3
523
Tumor
0.3
221
Tumor
0.2
1043
Tumor
0.2
455
Tumor
0.2
343
Tumor
0.2
535
Tumor
0.2
553
Tumor
0.2
937
Tumor
0.2
697
Tumor
0.1
865
Tumor
0.1
647
Tumor
0.1
185
Tumor
0.1
1022
Normal
0.1
285
Tumor
0.1
874
Normal
0.1
554
Normal
0.1
557
Tumor
0.1
857
Tumor
0.0
491
Tumor
0.0
567
Tumor
0.0
571
Tumor
0.0
474
Normal
0.0
921
Tumor
0.0
327
Tumor
0.0
271
Tumor
0.0
211
Tumor
0.0
878
Normal
0.0
861
Tumor
0.0
498
Normal
0.0
925
Tumor
0.0
518
Normal
0.0
227
Tumor
0.0
955
Tumor
0.0
217
Tumor
0.0
924
Normal
0.0
537
Tumor
0.0
123
Tumor
0.0
963
Tumor
-0.1
744
Normal
-0.1
1025
Tumor
-0.1
142
Normal
-0.1
516
Normal
-0.1
434
Normal
-0.1
1026
Normal
-0.1
917
Tumor
-0.1
983
Tumor
-0.1
546
Normal
-0.1
982
Normal
-0.1
1013
Tumor
-0.1
715
Tumor
-0.1
533
Tumor
-0.1
1021
Tumor
-0.1
536
Normal
-0.1
918
Normal
-0.1
956
Normal
-0.1
138
Normal
-0.1
261
Tumor
-0.1
698
Normal
-0.1
214
Normal
-0.1
213
Tumor
-0.1
881
Tumor
-0.1
695
Tumor
-0.1
447
Tumor
-0.1
383
Tumor
-0.1
515
Tumor
-0.1
493
Tumor
-0.1
1016
Normal
-0.1
461
Tumor
-0.1
663
Tumor
-0.1
778
Normal
-0.1
218
Normal
-0.1
728
Normal
-0.1
452
Normal
-0.1
965
Tumor
-0.2
816
Normal
-0.2
448
Normal
-0.2
916
Normal
-0.2
283
Tumor
-0.2
141
Tumor
-0.2
467
Tumor
-0.2
456
Normal
-0.2
444
Normal
-0.2
426
Normal
-0.2
814
Normal
-0.2
172
Normal
-0.2
344
Normal
-0.2
721
Tumor
-0.2
641
Tumor
-0.2
1044
Normal
-0.2
671
Tumor
-0.2
272
Normal
-0.2
428
Normal
-0.2
413
Tumor
-0.2
966
Normal
-0.2
192
Normal
-0.2
124
Normal
-0.2
573
Tumor
-0.2
386
Normal
-0.2
738
Normal
-0.2
423
Tumor
-0.2
981
Tumor
-0.2
161
Tumor
-0.2
852
Normal
-0.2
262
Normal
-0.2
422
Normal
-0.2
424
Normal
-0.2
661
Tumor
-0.2
145
Tumor
-0.2
342
Normal
-0.2
228
Normal
-0.2
311
Tumor
-0.2
864
Normal
-0.3
393
Tumor
-0.3
114
Normal
-0.3
267
Tumor
-0.3
574
Normal
-0.3
125
Tumor
-0.3
135
Tumor
-0.3
137
Tumor
-0.3
128
Normal
-0.3
268
Normal
-0.3
258
Normal
-0.3
473
Tumor
-0.3
1015
Tumor
-0.3
746
Normal
-0.3
212
Normal
-0.3
563
Tumor
-0.3
392
Normal
-0.3
341
Tumor
-0.3
984
Normal
-0.3
411
Tumor
-0.3
524
Normal
-0.3
436
Normal
-0.3
696
Normal
-0.3
1032
Normal
-0.3
162
Normal
-0.3
195
Tumor
-0.3
171
Tumor
-0.3
113
Tumor
-0.3
513
Tumor
-0.3
727
Tumor
-0.3
415
Tumor
-0.3
136
Normal
-0.3
412
Normal
-0.3
222
Normal
-0.3
231
Tumor
-0.3
188
Normal
-0.3
867
Tumor
-0.3
414
Normal
-0.3
352
Normal
-0.3
866
Normal
-0.3
517
Tumor
-0.3
131
Tumor
-0.3
465
Tumor
-0.3
111
Normal
-0.3
883
Tumor
-0.3
366
Normal
-0.3
953
Tumor
-0.3
126
Normal
-0.4
385
Tumor
-0.4
484
Normal
-0.4
483
Tumor
-0.4
685
Tumor
-0.4
466
Normal
-0.4
534
Normal
-0.4
361
Tumor
-0.4
451
Tumor
-0.4
354
Normal
-0.4
284
Normal
-0.4
446
Normal
-0.4
642
Normal
-0.4
186
Normal
-0.4
686
Normal
-0.4
911
Tumor
-0.4
627
Tumor
-0.4
297
Tumor
-0.4
187
Tumor
-0.4
488
Normal
-0.4
716
Normal
-0.4
365
Tumor
-0.4
146
Normal
-0.4
494
Normal
-0.4
526
Normal
-0.4
196
Normal
-0.4
368
Normal
-0.4
127
Tumor
-0.4
362
Normal
-0.4
662
Normal
-0.4
922
Normal
-0.4
914
Normal
-0.4
298
Normal
-0.4
432
Normal
-0.4
664
Normal
-0.4
396
Normal
-0.4
1042
Normal
-0.4
1041
Tumor
-0.5
277
Tumor
-0.5
462
Normal
-0.5
915
Tumor
-0.5
388
Normal
-0.5
376
Normal
-0.5
1031
Tumor
-0.5
468
Normal
-0.5
824
Normal
-0.5
286
Normal
-0.5
714
Normal
-0.5
433
Tumor
-0.5
944
Normal
-0.5
723
Tumor
-0.5
913
Tumor
-0.5
528
Normal
-0.5
435
Tumor
-0.5
224
Normal
-0.5
328
Normal
-0.5
851
Tumor
-0.5
815
Tumor
-0.5
938
Normal
-0.5
364
Normal
-0.5
351
Tumor
-0.5
232
Normal
-0.5
863
Tumor
-0.5
478
Normal
-0.5
132
Normal
-0.5
1046
Normal
-0.5
564
Normal
-0.5
394
Normal
-0.5
1014
Normal
-0.5
873
Tumor
-0.5
742
Normal
-0.5
416
Normal
-0.5
464
Normal
-0.5
358
Normal
-0.6
618
Normal
-0.6
724
Normal
-0.6
976
Normal
-0.6
391
Tumor
-0.6
514
Normal
-0.6
353
Tumor
-0.6
278
Normal
-0.6
672
Normal
-0.6
148
Normal
-0.6
785
Tumor
-0.6
722
Normal
-0.6
954
Normal
-0.6
387
Tumor
-0.6
743
Tumor
-0.6
858
Normal
-0.6
786
Normal
-0.6
568
Normal
-0.6
741
Tumor
-0.6
882
Normal
-0.6
636
Normal
-0.6
868
Normal
-0.6
487
Tumor
-0.6
756
Normal
-0.6
968
Normal
-0.6
713
Tumor
-0.6
777
Tumor
-0.6
472
Normal
-0.6
978
Normal
-0.7
356
Normal
-0.7
877
Tumor
-0.7
862
Normal
-0.7
648
Normal
-0.7
384
Normal
-0.7
926
Normal
-0.7
191
Tumor
-0.7
482
Normal
-0.7
312
Normal
-0.7
958
Normal
-0.7
665
Tumor
-0.7
572
Normal
-0.7
445
Tumor
-0.7
558
Normal
-0.7
615
Tumor
-0.8
628
Normal
-0.8
964
Normal
-0.8
481
Tumor
-0.8
314
Normal
-0.8
666
Normal
-0.9
818
Normal
-0.9
332
Normal
-0.9
884
Normal
-0.9
616
Normal
-0.9
755
Tumor
-0.9
313
Tumor
-0.9
357
Tumor
-1.0
331
Tumor
-1.2
912
Normal
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.