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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
231
Samples
Sample
Description
TPM
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
815
Tumor
2.0
387
Tumor
1.9
786
Normal
1.9
463
Tumor
1.7
413
Tumor
1.7
388
Normal
1.6
393
Tumor
1.4
285
Tumor
1.3
778
Normal
1.3
396
Normal
1.2
451
Tumor
1.2
391
Tumor
1.2
745
Tumor
1.1
465
Tumor
1.0
785
Tumor
1.0
392
Normal
1.0
394
Normal
0.9
744
Normal
0.9
851
Tumor
0.9
464
Normal
0.9
436
Normal
0.9
755
Tumor
0.9
386
Normal
0.9
368
Normal
0.8
672
Normal
0.8
395
Tumor
0.8
435
Tumor
0.8
944
Normal
0.8
456
Normal
0.7
342
Normal
0.7
957
Tumor
0.7
466
Normal
0.7
332
Normal
0.7
192
Normal
0.7
666
Normal
0.7
224
Normal
0.7
742
Normal
0.7
446
Normal
0.7
191
Tumor
0.7
746
Normal
0.7
513
Tumor
0.6
352
Normal
0.6
756
Normal
0.6
227
Tumor
0.6
432
Normal
0.6
1044
Normal
0.6
127
Tumor
0.6
384
Normal
0.6
298
Normal
0.6
723
Tumor
0.6
366
Normal
0.6
1046
Normal
0.6
488
Normal
0.6
376
Normal
0.6
344
Normal
0.6
1032
Normal
0.6
824
Normal
0.6
664
Normal
0.5
866
Normal
0.5
538
Normal
0.5
314
Normal
0.5
484
Normal
0.5
124
Normal
0.5
965
Tumor
0.5
162
Normal
0.5
196
Normal
0.5
172
Normal
0.5
738
Normal
0.5
385
Tumor
0.5
572
Normal
0.5
943
Tumor
0.5
958
Normal
0.5
938
Normal
0.5
868
Normal
0.5
468
Normal
0.5
148
Normal
0.5
1016
Normal
0.5
277
Tumor
0.5
818
Normal
0.5
278
Normal
0.5
1025
Tumor
0.4
858
Normal
0.4
367
Tumor
0.4
635
Tumor
0.4
261
Tumor
0.4
498
Normal
0.4
142
Normal
0.4
145
Tumor
0.4
111
Normal
0.4
954
Normal
0.4
186
Normal
0.4
312
Normal
0.4
737
Tumor
0.4
665
Tumor
0.4
452
Normal
0.4
445
Tumor
0.4
146
Normal
0.4
214
Normal
0.4
212
Normal
0.4
981
Tumor
0.4
976
Normal
0.4
535
Tumor
0.4
814
Normal
0.4
126
Normal
0.4
864
Normal
0.4
743
Tumor
0.4
728
Normal
0.4
813
Tumor
0.3
628
Normal
0.3
1014
Normal
0.3
357
Tumor
0.3
358
Normal
0.3
964
Normal
0.3
571
Tumor
0.3
284
Normal
0.3
494
Normal
0.3
128
Normal
0.3
862
Normal
0.3
648
Normal
0.3
195
Tumor
0.3
1041
Tumor
0.3
136
Normal
0.3
222
Normal
0.2
137
Tumor
0.2
568
Normal
0.2
984
Normal
0.2
967
Tumor
0.2
923
Tumor
0.2
267
Tumor
0.2
268
Normal
0.2
618
Normal
0.2
412
Normal
0.2
952
Normal
0.2
132
Normal
0.2
147
Tumor
0.2
514
Normal
0.2
362
Normal
0.2
857
Tumor
0.2
188
Normal
0.2
953
Tumor
0.2
925
Tumor
0.2
444
Normal
0.2
926
Normal
0.2
777
Tumor
0.2
431
Tumor
0.2
428
Normal
0.2
884
Normal
0.2
968
Normal
0.2
258
Normal
0.2
546
Normal
0.2
922
Normal
0.2
698
Normal
0.1
1021
Tumor
0.1
364
Normal
0.1
443
Tumor
0.1
616
Normal
0.1
492
Normal
0.1
141
Tumor
0.1
528
Normal
0.1
574
Normal
0.1
956
Normal
0.1
228
Normal
0.1
534
Normal
0.1
1045
Tumor
0.1
138
Normal
0.1
1026
Normal
0.1
113
Tumor
0.1
873
Tumor
0.1
114
Normal
0.1
272
Normal
0.1
161
Tumor
0.1
882
Normal
0.1
1022
Normal
0.1
365
Tumor
0.1
554
Normal
0.1
414
Normal
0.0
185
Tumor
0.0
262
Normal
0.0
424
Normal
0.0
331
Tumor
0.0
1015
Tumor
0.0
1028
Normal
0.0
213
Tumor
0.0
924
Normal
0.0
863
Tumor
0.0
874
Normal
0.0
361
Tumor
0.0
448
Normal
0.0
356
Normal
0.0
642
Normal
0.0
912
Normal
0.0
286
Normal
0.0
516
Normal
0.0
816
Normal
0.0
918
Normal
0.0
916
Normal
0.0
564
Normal
0.0
1042
Normal
0.0
878
Normal
0.0
636
Normal
0.0
135
Tumor
0.0
558
Normal
0.0
982
Normal
0.0
662
Normal
0.0
354
Normal
-0.1
536
Normal
-0.1
422
Normal
-0.1
883
Tumor
-0.1
341
Tumor
-0.1
518
Normal
-0.1
218
Normal
-0.1
526
Normal
-0.1
915
Tumor
-0.1
427
Tumor
-0.1
328
Normal
-0.1
491
Tumor
-0.1
343
Tumor
-0.1
545
Tumor
-0.1
426
Normal
-0.1
661
Tumor
-0.1
917
Tumor
-0.1
221
Tumor
-0.1
1043
Tumor
-0.1
383
Tumor
-0.2
363
Tumor
-0.2
433
Tumor
-0.2
1031
Tumor
-0.2
1027
Tumor
-0.2
741
Tumor
-0.2
217
Tumor
-0.2
415
Tumor
-0.2
493
Tumor
-0.2
515
Tumor
-0.2
283
Tumor
-0.2
187
Tumor
-0.2
978
Normal
-0.2
663
Tumor
-0.2
297
Tumor
-0.2
375
Tumor
-0.2
355
Tumor
-0.2
966
Normal
-0.2
467
Tumor
-0.2
171
Tumor
-0.3
533
Tumor
-0.3
823
Tumor
-0.3
955
Tumor
-0.3
977
Tumor
-0.3
914
Normal
-0.3
416
Normal
-0.3
232
Normal
-0.3
983
Tumor
-0.3
817
Tumor
-0.3
921
Tumor
-0.3
913
Tumor
-0.3
497
Tumor
-0.3
647
Tumor
-0.3
963
Tumor
-0.3
937
Tumor
-0.3
852
Normal
-0.3
487
Tumor
-0.3
563
Tumor
-0.3
865
Tumor
-0.4
421
Tumor
-0.4
727
Tumor
-0.4
411
Tumor
-0.4
671
Tumor
-0.4
1013
Tumor
-0.4
131
Tumor
-0.4
112
Tumor
-0.4
271
Tumor
-0.4
975
Tumor
-0.4
257
Tumor
-0.4
351
Tumor
-0.5
527
Tumor
-0.5
447
Tumor
-0.5
861
Tumor
-0.5
311
Tumor
-0.5
524
Normal
-0.5
313
Tumor
-0.5
697
Tumor
-0.5
423
Tumor
-0.5
641
Tumor
-0.5
557
Tumor
-0.5
483
Tumor
-0.5
434
Normal
-0.5
223
Tumor
-0.5
125
Tumor
-0.5
615
Tumor
-0.5
881
Tumor
-0.5
627
Tumor
-0.5
123
Tumor
-0.6
567
Tumor
-0.6
951
Tumor
-0.6
573
Tumor
-0.6
724
Normal
-0.7
353
Tumor
-0.7
231
Tumor
-0.7
425
Tumor
-0.7
877
Tumor
-0.7
537
Tumor
-0.7
211
Tumor
-0.8
517
Tumor
-0.8
523
Tumor
-0.8
911
Tumor
-0.8
327
Tumor
-0.9
617
Tumor
-0.9
525
Tumor
-1.0
867
Tumor
-1.1
455
Tumor
-1.3
553
Tumor
-1.4
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
