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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:176.1 nTPM
GTEx:176.1 nTPM
FANTOM5:117.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA031531
Squamous epithelial cells Low



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 176.1
Samples: 170

Max nTPM: 287.6
Min nTPM: 110.3
Std nTPM: 31.7
Median nTPM: 171.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 287.6
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 269.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 268.7
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 258.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 256.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 250.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 244.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 243.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 235.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 233.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 228.2
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 226.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 219.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 219.3
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 217.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 217.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 216.4
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 216.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 214.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 214.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 213.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 212.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 211.6
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 211.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 210.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 208.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 207.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 206.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 204.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 204.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 203.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 203.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 201.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 201.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 201.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 199.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 199.2
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 198.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 198.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 197.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 197.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 196.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 196.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 194.6
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 194.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 193.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 193.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 193.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 192.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 192.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 191.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 190.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 189.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 187.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 187.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 186.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 186.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 186.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 186.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 185.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 185.5
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 185.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 183.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 181.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 181.4
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 181.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 180.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 180.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 179.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 179.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 179.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 177.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 176.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 176.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 175.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 175.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 174.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 174.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 174.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 172.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 172.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 172.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 172.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 172.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 171.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 171.4
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 170.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 170.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 170.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 170.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 168.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 167.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 167.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 166.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 165.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 165.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 165.8
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 165.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 164.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 164.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 163.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 162.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 162.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 162.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 161.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 161.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 161.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 161.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 160.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 159.4
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 159.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 159.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 157.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 157.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 157.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 157.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 157.0
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 157.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 156.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 156.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 156.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 153.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 153.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 153.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 153.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 152.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 151.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 151.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 151.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 150.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 149.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 149.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 149.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 149.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 149.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 148.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 148.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 148.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 148.3
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 148.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 147.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 146.9
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 146.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 146.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 146.3
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 145.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 144.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 144.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 143.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 143.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 143.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 142.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 141.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 140.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 139.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 139.5
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 139.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 137.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 137.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 136.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 133.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 133.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 133.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 133.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 131.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 131.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 130.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 125.1
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 114.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 110.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

117.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 117.2
FF:10204-103F6 68 years, female 117.2

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