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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIRT6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIRT6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.2
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
222
Normal
0.9
722
Normal
0.9
272
Normal
0.8
196
Normal
0.8
262
Normal
0.8
232
Normal
0.8
395
Tumor
0.7
145
Tumor
0.7
135
Tumor
0.7
138
Normal
0.7
665
Tumor
0.6
146
Normal
0.6
865
Tumor
0.6
358
Normal
0.6
918
Normal
0.6
916
Normal
0.6
383
Tumor
0.6
132
Normal
0.5
467
Tumor
0.5
926
Normal
0.5
214
Normal
0.5
332
Normal
0.5
473
Tumor
0.5
384
Normal
0.5
218
Normal
0.5
814
Normal
0.5
375
Tumor
0.5
286
Normal
0.5
388
Normal
0.5
136
Normal
0.5
777
Tumor
0.5
224
Normal
0.5
217
Tumor
0.5
227
Tumor
0.4
917
Tumor
0.4
663
Tumor
0.4
314
Normal
0.4
192
Normal
0.4
425
Tumor
0.4
943
Tumor
0.4
967
Tumor
0.4
368
Normal
0.4
278
Normal
0.4
497
Tumor
0.4
331
Tumor
0.4
228
Normal
0.4
427
Tumor
0.3
491
Tumor
0.3
352
Normal
0.3
455
Tumor
0.3
423
Tumor
0.3
661
Tumor
0.3
137
Tumor
0.3
141
Tumor
0.3
258
Normal
0.3
283
Tumor
0.3
195
Tumor
0.3
284
Normal
0.3
366
Normal
0.3
393
Tumor
0.3
367
Tumor
0.3
756
Normal
0.3
394
Normal
0.3
125
Tumor
0.3
922
Normal
0.3
298
Normal
0.3
925
Tumor
0.3
211
Tumor
0.3
361
Tumor
0.3
313
Tumor
0.2
463
Tumor
0.2
376
Normal
0.2
342
Normal
0.2
365
Tumor
0.2
221
Tumor
0.2
436
Normal
0.2
444
Normal
0.2
124
Normal
0.2
411
Tumor
0.2
534
Normal
0.2
426
Normal
0.2
128
Normal
0.2
353
Tumor
0.2
813
Tumor
0.2
392
Normal
0.2
755
Tumor
0.2
312
Normal
0.2
268
Normal
0.2
513
Tumor
0.2
355
Tumor
0.2
863
Tumor
0.2
285
Tumor
0.2
563
Tumor
0.2
354
Normal
0.2
413
Tumor
0.2
111
Normal
0.2
545
Tumor
0.2
422
Normal
0.2
142
Normal
0.2
213
Tumor
0.2
428
Normal
0.2
451
Tumor
0.2
277
Tumor
0.2
445
Tumor
0.2
627
Tumor
0.2
223
Tumor
0.2
641
Tumor
0.2
424
Normal
0.2
344
Normal
0.2
126
Normal
0.2
724
Normal
0.2
396
Normal
0.2
785
Tumor
0.2
714
Normal
0.2
191
Tumor
0.2
414
Normal
0.2
386
Normal
0.1
666
Normal
0.1
114
Normal
0.1
446
Normal
0.1
696
Normal
0.1
297
Tumor
0.1
664
Normal
0.1
526
Normal
0.1
362
Normal
0.1
615
Tumor
0.1
647
Tumor
0.1
528
Normal
0.1
662
Normal
0.1
672
Normal
0.1
737
Tumor
0.1
127
Tumor
0.1
524
Normal
0.1
431
Tumor
0.1
421
Tumor
0.1
535
Tumor
0.1
461
Tumor
0.1
671
Tumor
0.1
487
Tumor
0.1
357
Tumor
0.1
443
Tumor
0.1
518
Normal
0.1
516
Normal
0.1
954
Normal
0.1
635
Tumor
0.1
617
Tumor
0.1
515
Tumor
0.1
533
Tumor
0.1
212
Normal
0.1
572
Normal
0.1
343
Tumor
0.0
432
Normal
0.0
553
Tumor
0.0
527
Tumor
0.0
778
Normal
0.0
493
Tumor
0.0
616
Normal
0.0
574
Normal
0.0
311
Tumor
0.0
351
Tumor
0.0
327
Tumor
0.0
746
Normal
0.0
716
Normal
0.0
447
Tumor
0.0
267
Tumor
0.0
257
Tumor
0.0
955
Tumor
0.0
492
Normal
0.0
488
Normal
0.0
498
Normal
0.0
1046
Normal
0.0
387
Tumor
0.0
636
Normal
0.0
628
Normal
0.0
728
Normal
0.0
715
Tumor
0.0
953
Tumor
0.0
328
Normal
0.0
465
Tumor
0.0
1045
Tumor
0.0
434
Normal
0.0
786
Normal
0.0
915
Tumor
0.0
937
Tumor
0.0
433
Tumor
0.0
464
Normal
-0.1
695
Tumor
-0.1
471
Tumor
-0.1
483
Tumor
-0.1
1015
Tumor
-0.1
698
Normal
-0.1
697
Tumor
-0.1
517
Tumor
-0.1
978
Normal
-0.1
514
Normal
-0.1
745
Tumor
-0.1
1042
Normal
-0.1
982
Normal
-0.1
648
Normal
-0.1
924
Normal
-0.1
981
Tumor
-0.1
738
Normal
-0.1
742
Normal
-0.1
618
Normal
-0.1
1041
Tumor
-0.1
914
Normal
-0.1
557
Tumor
-0.1
951
Tumor
-0.1
1025
Tumor
-0.1
113
Tumor
-0.1
468
Normal
-0.1
983
Tumor
-0.1
538
Normal
-0.1
523
Tumor
-0.1
456
Normal
-0.1
546
Normal
-0.1
472
Normal
-0.1
1026
Normal
-0.1
713
Tumor
-0.1
912
Normal
-0.2
923
Tumor
-0.2
721
Tumor
-0.2
466
Normal
-0.2
231
Tumor
-0.2
884
Normal
-0.2
131
Tumor
-0.2
877
Tumor
-0.2
1044
Normal
-0.2
564
Normal
-0.2
484
Normal
-0.2
481
Tumor
-0.2
363
Tumor
-0.2
977
Tumor
-0.2
1022
Normal
-0.2
1016
Normal
-0.2
568
Normal
-0.2
554
Normal
-0.2
1032
Normal
-0.2
1013
Tumor
-0.2
571
Tumor
-0.2
975
Tumor
-0.2
642
Normal
-0.2
462
Normal
-0.2
1014
Normal
-0.2
881
Tumor
-0.2
112
Tumor
-0.2
861
Tumor
-0.2
364
Normal
-0.2
744
Normal
-0.2
478
Normal
-0.2
452
Normal
-0.3
686
Normal
-0.3
123
Tumor
-0.3
743
Tumor
-0.3
723
Tumor
-0.3
537
Tumor
-0.3
494
Normal
-0.3
965
Tumor
-0.3
1043
Tumor
-0.3
536
Normal
-0.3
525
Tumor
-0.3
567
Tumor
-0.3
956
Normal
-0.3
391
Tumor
-0.3
416
Normal
-0.3
938
Normal
-0.3
435
Tumor
-0.3
944
Normal
-0.3
261
Tumor
-0.3
882
Normal
-0.3
341
Tumor
-0.3
913
Tumor
-0.3
1031
Tumor
-0.3
356
Normal
-0.3
864
Normal
-0.3
573
Tumor
-0.3
558
Normal
-0.3
685
Tumor
-0.3
867
Tumor
-0.4
952
Normal
-0.4
1028
Normal
-0.4
984
Normal
-0.4
874
Normal
-0.4
415
Tumor
-0.4
385
Tumor
-0.4
883
Tumor
-0.4
958
Normal
-0.4
271
Tumor
-0.4
474
Normal
-0.4
957
Tumor
-0.5
412
Normal
-0.5
921
Tumor
-0.5
448
Normal
-0.5
1027
Tumor
-0.5
862
Normal
-0.5
741
Tumor
-0.5
878
Normal
-0.5
966
Normal
-0.5
868
Normal
-0.5
866
Normal
-0.5
1021
Tumor
-0.5
482
Normal
-0.6
976
Normal
-0.6
911
Tumor
-0.6
727
Tumor
-0.6
477
Tumor
-0.6
968
Normal
-0.6
873
Tumor
-0.6
963
Tumor
-0.7
964
Normal
-0.8
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
858
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
