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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRPA is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
198.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
140.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
107.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
105.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
100.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
97.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
89.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
88.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
84.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
81.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
76.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
76.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
75.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
73.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
72.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
71.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
70.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
69.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
69.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
68.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
68.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
68.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
67.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
66.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
66.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
64.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
64.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
64.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
63.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
63.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
62.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
62.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
61.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
61.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
61.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
60.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
60.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
60.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
59.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
59.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
59.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
59.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
57.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
57.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
57.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
56.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
56.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
56.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
55.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
55.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
54.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
53.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
53.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
53.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
53.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
52.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
51.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
51.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
51.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
51.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
50.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
50.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
49.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
48.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
48.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
47.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
47.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
46.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
46.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
46.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
46.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
45.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
45.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
44.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
44.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
43.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
43.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
43.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
43.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
42.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
42.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
42.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
41.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
40.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
40.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
40.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
40.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
39.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
39.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
39.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
38.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
38.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
37.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
36.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
36.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
35.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
35.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
35.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
35.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
34.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
33.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
33.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
32.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
32.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
31.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
30.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
29.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
29.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
29.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
27.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
26.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRPA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.8
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
205.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
163.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
97.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
96.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
86.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
83.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
77.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
76.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
75.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
67.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
65.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
63.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
63.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
62.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
58.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
57.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
57.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
56.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
55.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
54.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
53.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
53.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
52.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
52.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
48.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
47.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
46.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
45.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
45.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
45.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
45.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
44.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
43.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
39.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
38.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
36.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
35.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
33.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
31.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
31.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.7
965
Tumor
0.6
497
Tumor
0.6
285
Tumor
0.5
661
Tumor
0.5
331
Tumor
0.5
413
Tumor
0.5
737
Tumor
0.5
367
Tumor
0.5
967
Tumor
0.5
727
Tumor
0.5
411
Tumor
0.5
443
Tumor
0.5
131
Tumor
0.4
391
Tumor
0.4
724
Normal
0.4
123
Tumor
0.4
112
Tumor
0.4
425
Tumor
0.4
881
Tumor
0.4
351
Tumor
0.4
865
Tumor
0.4
957
Tumor
0.4
983
Tumor
0.4
917
Tumor
0.4
427
Tumor
0.4
523
Tumor
0.3
671
Tumor
0.3
545
Tumor
0.3
487
Tumor
0.3
535
Tumor
0.3
463
Tumor
0.3
431
Tumor
0.3
113
Tumor
0.3
271
Tumor
0.3
297
Tumor
0.3
385
Tumor
0.3
951
Tumor
0.3
467
Tumor
0.3
1021
Tumor
0.3
943
Tumor
0.3
478
Normal
0.3
277
Tumor
0.3
527
Tumor
0.3
363
Tumor
0.3
135
Tumor
0.3
883
Tumor
0.3
447
Tumor
0.3
663
Tumor
0.3
517
Tumor
0.3
227
Tumor
0.3
211
Tumor
0.3
815
Tumor
0.3
975
Tumor
0.3
1031
Tumor
0.3
647
Tumor
0.3
355
Tumor
0.2
221
Tumor
0.2
697
Tumor
0.2
923
Tumor
0.2
635
Tumor
0.2
357
Tumor
0.2
267
Tumor
0.2
963
Tumor
0.2
433
Tumor
0.2
571
Tumor
0.2
473
Tumor
0.2
877
Tumor
0.2
921
Tumor
0.2
141
Tumor
0.2
777
Tumor
0.2
665
Tumor
0.2
341
Tumor
0.2
666
Normal
0.2
641
Tumor
0.2
493
Tumor
0.2
537
Tumor
0.2
356
Normal
0.2
231
Tumor
0.2
415
Tumor
0.2
695
Tumor
0.2
713
Tumor
0.2
817
Tumor
0.2
423
Tumor
0.2
814
Normal
0.2
484
Normal
0.1
937
Tumor
0.1
977
Tumor
0.1
785
Tumor
0.1
384
Normal
0.1
161
Tumor
0.1
916
Normal
0.1
664
Normal
0.1
393
Tumor
0.1
741
Tumor
0.1
481
Tumor
0.1
954
Normal
0.1
383
Tumor
0.1
328
Normal
0.1
515
Tumor
0.1
867
Tumor
0.1
873
Tumor
0.1
925
Tumor
0.1
913
Tumor
0.1
483
Tumor
0.1
125
Tumor
0.1
213
Tumor
0.1
1044
Normal
0.1
662
Normal
0.1
617
Tumor
0.1
451
Tumor
0.1
471
Tumor
0.1
536
Normal
0.1
722
Normal
0.1
145
Tumor
0.1
311
Tumor
0.1
127
Tumor
0.1
217
Tumor
0.1
465
Tumor
0.1
482
Normal
0.1
553
Tumor
0.1
538
Normal
0.1
455
Tumor
0.1
715
Tumor
0.1
533
Tumor
0.1
567
Tumor
0.1
498
Normal
0.1
313
Tumor
0.1
861
Tumor
0.1
444
Normal
0.1
882
Normal
0.1
466
Normal
0.1
563
Tumor
0.1
448
Normal
0.1
412
Normal
0.1
375
Tumor
0.1
126
Normal
0.1
387
Tumor
0.1
343
Tumor
0.1
488
Normal
0.1
114
Normal
0.1
911
Tumor
0.1
1026
Normal
0.1
866
Normal
0.1
513
Tumor
0.1
955
Tumor
0.1
432
Normal
0.1
978
Normal
0.1
456
Normal
0.1
191
Tumor
0.1
477
Tumor
0.0
268
Normal
0.0
557
Tumor
0.0
857
Tumor
0.0
528
Normal
0.0
132
Normal
0.0
686
Normal
0.0
1013
Tumor
0.0
394
Normal
0.0
352
Normal
0.0
926
Normal
0.0
1046
Normal
0.0
395
Tumor
0.0
353
Tumor
0.0
1014
Normal
0.0
212
Normal
0.0
146
Normal
0.0
698
Normal
0.0
283
Tumor
0.0
187
Tumor
0.0
195
Tumor
0.0
524
Normal
0.0
1045
Tumor
0.0
573
Tumor
0.0
922
Normal
0.0
1032
Normal
0.0
851
Tumor
0.0
1041
Tumor
0.0
964
Normal
0.0
685
Tumor
0.0
364
Normal
0.0
714
Normal
0.0
648
Normal
0.0
386
Normal
0.0
298
Normal
0.0
137
Tumor
0.0
1025
Tumor
0.0
342
Normal
0.0
786
Normal
0.0
435
Tumor
0.0
434
Normal
0.0
461
Tumor
0.0
361
Tumor
0.0
574
Normal
0.0
813
Tumor
0.0
878
Normal
0.0
912
Normal
0.0
615
Tumor
0.0
944
Normal
0.0
464
Normal
0.0
958
Normal
0.0
858
Normal
0.0
1015
Tumor
0.0
863
Tumor
0.0
721
Tumor
0.0
755
Tumor
0.0
823
Tumor
0.0
332
Normal
0.0
966
Normal
0.0
492
Normal
0.0
824
Normal
0.0
953
Tumor
0.0
1042
Normal
0.0
284
Normal
0.0
196
Normal
0.0
358
Normal
0.0
314
Normal
0.0
426
Normal
0.0
756
Normal
0.0
128
Normal
0.0
534
Normal
0.0
868
Normal
0.0
261
Tumor
0.0
627
Tumor
0.0
111
Normal
0.0
982
Normal
0.0
546
Normal
0.0
472
Normal
0.0
696
Normal
0.0
416
Normal
0.0
185
Tumor
0.0
462
Normal
0.0
365
Tumor
0.0
618
Normal
0.0
468
Normal
0.0
223
Tumor
0.0
392
Normal
0.0
327
Tumor
0.0
984
Normal
0.0
124
Normal
0.0
554
Normal
0.0
818
Normal
0.0
428
Normal
0.0
514
Normal
0.0
976
Normal
0.0
723
Tumor
0.0
376
Normal
0.0
1016
Normal
0.0
228
Normal
0.0
445
Tumor
0.0
744
Normal
0.0
192
Normal
0.0
136
Normal
0.0
396
Normal
0.0
672
Normal
0.0
224
Normal
0.0
494
Normal
0.0
368
Normal
-0.1
446
Normal
-0.1
728
Normal
-0.1
138
Normal
-0.1
738
Normal
-0.1
421
Tumor
-0.1
172
Normal
-0.1
388
Normal
-0.1
344
Normal
-0.1
366
Normal
-0.1
171
Tumor
-0.1
414
Normal
-0.1
628
Normal
-0.1
1028
Normal
-0.1
162
Normal
-0.1
188
Normal
-0.1
218
Normal
-0.1
716
Normal
-0.1
1043
Tumor
-0.1
214
Normal
-0.1
938
Normal
-0.1
436
Normal
-0.1
778
Normal
-0.1
142
Normal
-0.1
354
Normal
-0.1
852
Normal
-0.1
148
Normal
-0.1
981
Tumor
-0.1
636
Normal
-0.1
257
Tumor
-0.1
362
Normal
-0.1
558
Normal
-0.1
742
Normal
-0.1
884
Normal
-0.1
1022
Normal
-0.1
864
Normal
-0.1
862
Normal
-0.1
474
Normal
-0.1
312
Normal
-0.1
518
Normal
-0.1
915
Tumor
-0.1
564
Normal
-0.1
924
Normal
-0.1
422
Normal
-0.1
1027
Tumor
-0.1
262
Normal
-0.1
968
Normal
-0.1
258
Normal
-0.1
918
Normal
-0.1
642
Normal
-0.1
278
Normal
-0.1
272
Normal
-0.1
816
Normal
-0.2
956
Normal
-0.2
424
Normal
-0.2
526
Normal
-0.2
222
Normal
-0.2
516
Normal
-0.2
286
Normal
-0.2
616
Normal
-0.2
186
Normal
-0.2
525
Tumor
-0.2
147
Tumor
-0.2
568
Normal
-0.2
874
Normal
-0.2
952
Normal
-0.2
452
Normal
-0.2
914
Normal
-0.2
232
Normal
-0.2
572
Normal
-0.2
746
Normal
-0.2
491
Tumor
-0.2
745
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
