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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFKB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
91.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
79.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
71.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
62.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
56.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
50.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
50.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
50.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
49.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
48.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
47.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
46.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
45.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
44.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
44.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
43.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
43.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
42.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
40.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
40.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
37.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
35.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
34.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFKB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.5
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
119.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
84.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
82.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
78.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
72.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
71.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
69.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
69.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
65.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
64.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
64.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
60.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
58.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
54.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
52.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
52.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
51.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
46.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
45.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
43.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
43.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
43.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
40.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
40.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
37.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
37.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
37.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
37.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
36.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
35.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
35.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
2.0
123
Tumor
1.3
967
Tumor
1.0
431
Tumor
1.0
755
Tumor
1.0
533
Tumor
1.0
1021
Tumor
0.9
271
Tumor
0.9
1031
Tumor
0.9
851
Tumor
0.9
471
Tumor
0.8
277
Tumor
0.8
213
Tumor
0.8
937
Tumor
0.8
523
Tumor
0.8
697
Tumor
0.8
661
Tumor
0.8
881
Tumor
0.8
1025
Tumor
0.8
815
Tumor
0.8
493
Tumor
0.8
983
Tumor
0.7
477
Tumor
0.7
413
Tumor
0.7
921
Tumor
0.7
455
Tumor
0.7
221
Tumor
0.7
951
Tumor
0.7
443
Tumor
0.7
311
Tumor
0.7
411
Tumor
0.7
823
Tumor
0.7
387
Tumor
0.7
917
Tumor
0.6
385
Tumor
0.6
361
Tumor
0.6
975
Tumor
0.6
395
Tumor
0.5
553
Tumor
0.5
721
Tumor
0.5
713
Tumor
0.5
463
Tumor
0.5
217
Tumor
0.5
467
Tumor
0.5
327
Tumor
0.5
465
Tumor
0.5
695
Tumor
0.4
647
Tumor
0.4
355
Tumor
0.4
925
Tumor
0.4
131
Tumor
0.4
1043
Tumor
0.4
524
Normal
0.4
297
Tumor
0.4
963
Tumor
0.4
447
Tumor
0.4
492
Normal
0.4
573
Tumor
0.4
191
Tumor
0.4
861
Tumor
0.4
814
Normal
0.4
343
Tumor
0.4
434
Normal
0.4
536
Normal
0.3
187
Tumor
0.3
451
Tumor
0.3
557
Tumor
0.3
966
Normal
0.3
113
Tumor
0.3
525
Tumor
0.3
444
Normal
0.3
535
Tumor
0.3
367
Tumor
0.3
617
Tumor
0.3
425
Tumor
0.3
383
Tumor
0.3
641
Tumor
0.3
955
Tumor
0.3
567
Tumor
0.3
977
Tumor
0.3
817
Tumor
0.3
923
Tumor
0.2
147
Tumor
0.2
231
Tumor
0.2
483
Tumor
0.2
188
Normal
0.2
943
Tumor
0.2
445
Tumor
0.2
478
Normal
0.2
223
Tumor
0.2
911
Tumor
0.2
268
Normal
0.2
545
Tumor
0.2
538
Normal
0.2
195
Tumor
0.2
331
Tumor
0.2
537
Tumor
0.2
498
Normal
0.1
192
Normal
0.1
741
Tumor
0.1
916
Normal
0.1
427
Tumor
0.1
685
Tumor
0.1
777
Tumor
0.1
125
Tumor
0.1
785
Tumor
0.1
433
Tumor
0.1
952
Normal
0.1
262
Normal
0.1
883
Tumor
0.1
857
Tumor
0.1
185
Tumor
0.1
285
Tumor
0.1
737
Tumor
0.1
957
Tumor
0.1
461
Tumor
0.1
867
Tumor
0.1
978
Normal
0.1
527
Tumor
0.1
563
Tumor
0.1
473
Tumor
0.1
145
Tumor
0.0
873
Tumor
0.0
497
Tumor
0.0
386
Normal
0.0
421
Tumor
0.0
513
Tumor
0.0
393
Tumor
0.0
813
Tumor
0.0
141
Tumor
0.0
126
Normal
0.0
375
Tumor
0.0
745
Tumor
0.0
724
Normal
0.0
915
Tumor
0.0
517
Tumor
0.0
283
Tumor
0.0
954
Normal
0.0
351
Tumor
0.0
415
Tumor
0.0
218
Normal
-0.1
112
Tumor
-0.1
1028
Normal
-0.1
224
Normal
-0.1
1015
Tumor
-0.1
1041
Tumor
-0.1
384
Normal
-0.1
778
Normal
-0.1
852
Normal
-0.1
1044
Normal
-0.1
135
Tumor
-0.1
727
Tumor
-0.1
257
Tumor
-0.1
913
Tumor
-0.1
965
Tumor
-0.1
416
Normal
-0.1
362
Normal
-0.1
272
Normal
-0.1
877
Tumor
-0.1
161
Tumor
-0.1
214
Normal
-0.1
284
Normal
-0.1
554
Normal
-0.1
956
Normal
-0.2
816
Normal
-0.2
114
Normal
-0.2
984
Normal
-0.2
448
Normal
-0.2
391
Tumor
-0.2
976
Normal
-0.2
982
Normal
-0.2
874
Normal
-0.2
365
Tumor
-0.2
435
Tumor
-0.2
958
Normal
-0.2
635
Tumor
-0.2
686
Normal
-0.2
722
Normal
-0.2
516
Normal
-0.2
137
Tumor
-0.2
328
Normal
-0.2
884
Normal
-0.2
228
Normal
-0.2
341
Tumor
-0.2
1042
Normal
-0.2
1014
Normal
-0.2
364
Normal
-0.2
696
Normal
-0.2
138
Normal
-0.2
124
Normal
-0.2
716
Normal
-0.2
136
Normal
-0.2
665
Tumor
-0.2
715
Tumor
-0.2
926
Normal
-0.2
981
Tumor
-0.2
1045
Tumor
-0.2
714
Normal
-0.2
474
Normal
-0.2
953
Tumor
-0.2
432
Normal
-0.2
482
Normal
-0.2
436
Normal
-0.2
111
Normal
-0.2
446
Normal
-0.2
146
Normal
-0.2
491
Tumor
-0.3
738
Normal
-0.3
472
Normal
-0.3
298
Normal
-0.3
196
Normal
-0.3
366
Normal
-0.3
858
Normal
-0.3
258
Normal
-0.3
148
Normal
-0.3
912
Normal
-0.3
227
Tumor
-0.3
412
Normal
-0.3
558
Normal
-0.3
878
Normal
-0.3
518
Normal
-0.3
344
Normal
-0.3
728
Normal
-0.3
312
Normal
-0.3
964
Normal
-0.3
1016
Normal
-0.3
922
Normal
-0.3
868
Normal
-0.3
481
Tumor
-0.3
286
Normal
-0.3
756
Normal
-0.3
222
Normal
-0.3
914
Normal
-0.3
968
Normal
-0.3
514
Normal
-0.3
882
Normal
-0.3
171
Tumor
-0.3
494
Normal
-0.3
357
Tumor
-0.3
938
Normal
-0.4
918
Normal
-0.4
662
Normal
-0.4
232
Normal
-0.4
574
Normal
-0.4
546
Normal
-0.4
944
Normal
-0.4
428
Normal
-0.4
526
Normal
-0.4
278
Normal
-0.4
666
Normal
-0.4
172
Normal
-0.4
528
Normal
-0.4
924
Normal
-0.4
212
Normal
-0.4
368
Normal
-0.4
484
Normal
-0.4
642
Normal
-0.4
671
Tumor
-0.4
424
Normal
-0.4
162
Normal
-0.4
866
Normal
-0.4
862
Normal
-0.4
1046
Normal
-0.4
468
Normal
-0.4
1022
Normal
-0.4
746
Normal
-0.4
515
Tumor
-0.4
352
Normal
-0.4
456
Normal
-0.4
267
Tumor
-0.4
313
Tumor
-0.4
627
Tumor
-0.4
1032
Normal
-0.4
824
Normal
-0.4
571
Tumor
-0.4
422
Normal
-0.4
864
Normal
-0.4
142
Normal
-0.4
462
Normal
-0.4
464
Normal
-0.4
534
Normal
-0.5
698
Normal
-0.5
396
Normal
-0.5
1026
Normal
-0.5
488
Normal
-0.5
723
Tumor
-0.5
564
Normal
-0.5
487
Tumor
-0.5
332
Normal
-0.5
127
Tumor
-0.5
664
Normal
-0.5
353
Tumor
-0.5
186
Normal
-0.5
744
Normal
-0.5
466
Normal
-0.5
616
Normal
-0.5
742
Normal
-0.5
628
Normal
-0.5
132
Normal
-0.5
743
Tumor
-0.5
392
Normal
-0.5
672
Normal
-0.5
648
Normal
-0.5
818
Normal
-0.5
786
Normal
-0.5
356
Normal
-0.5
452
Normal
-0.5
426
Normal
-0.5
376
Normal
-0.5
358
Normal
-0.5
414
Normal
-0.5
663
Tumor
-0.6
314
Normal
-0.6
423
Tumor
-0.6
1027
Tumor
-0.6
388
Normal
-0.6
363
Tumor
-0.6
572
Normal
-0.6
863
Tumor
-0.6
615
Tumor
-0.6
394
Normal
-0.6
1013
Tumor
-0.6
261
Tumor
-0.7
568
Normal
-0.7
342
Normal
-0.7
354
Normal
-0.7
865
Tumor
-0.7
128
Normal
-0.7
618
Normal
-0.8
636
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
