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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MBNL3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
262.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
154.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
145.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
108.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
103.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
102.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
97.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
97.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
90.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
87.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
85.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
84.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
79.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
79.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
77.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
73.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
69.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
68.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
68.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
64.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
64.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
61.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
61.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
60.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
60.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
59.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
58.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
57.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
56.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
55.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
53.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
53.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
53.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
51.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
49.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
49.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
48.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
48.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
47.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
46.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
44.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
44.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
42.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
42.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
40.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
39.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
37.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
37.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
36.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MBNL3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.8
Number of samples
231
Samples
Sample
Description
TPM
DO50820
0 years, female, NA, stage:3, alive, 510 days
135.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
123.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
99.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
93.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
91.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
91.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
87.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
85.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
83.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
71.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
67.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
67.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
65.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
62.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
60.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
57.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
57.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
56.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
56.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
55.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
53.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
52.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
50.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
46.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
45.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
44.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
42.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
40.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
38.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
38.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
35.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
34.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
33.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
33.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
33.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
28.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
817
Tumor
1.7
131
Tumor
1.5
977
Tumor
1.4
724
Normal
1.3
727
Tumor
1.2
171
Tumor
1.1
665
Tumor
1.1
951
Tumor
1.1
641
Tumor
1.0
285
Tumor
1.0
231
Tumor
0.9
743
Tumor
0.9
685
Tumor
0.9
965
Tumor
0.9
497
Tumor
0.9
451
Tumor
0.9
1021
Tumor
0.8
715
Tumor
0.8
915
Tumor
0.8
487
Tumor
0.8
975
Tumor
0.8
851
Tumor
0.8
545
Tumor
0.8
123
Tumor
0.8
881
Tumor
0.7
271
Tumor
0.7
921
Tumor
0.7
1013
Tumor
0.7
223
Tumor
0.7
553
Tumor
0.7
221
Tumor
0.7
923
Tumor
0.7
745
Tumor
0.6
537
Tumor
0.6
473
Tumor
0.6
1031
Tumor
0.6
1025
Tumor
0.6
1043
Tumor
0.5
877
Tumor
0.5
261
Tumor
0.5
857
Tumor
0.5
865
Tumor
0.5
671
Tumor
0.4
523
Tumor
0.4
695
Tumor
0.4
351
Tumor
0.4
737
Tumor
0.4
963
Tumor
0.4
573
Tumor
0.4
433
Tumor
0.4
861
Tumor
0.4
341
Tumor
0.4
785
Tumor
0.4
147
Tumor
0.4
567
Tumor
0.4
493
Tumor
0.3
755
Tumor
0.3
943
Tumor
0.3
517
Tumor
0.3
461
Tumor
0.3
471
Tumor
0.3
267
Tumor
0.3
617
Tumor
0.3
467
Tumor
0.3
883
Tumor
0.3
425
Tumor
0.3
615
Tumor
0.2
515
Tumor
0.2
463
Tumor
0.2
484
Normal
0.2
331
Tumor
0.2
137
Tumor
0.2
161
Tumor
0.2
1015
Tumor
0.2
127
Tumor
0.2
911
Tumor
0.2
661
Tumor
0.2
187
Tumor
0.2
533
Tumor
0.1
411
Tumor
0.1
431
Tumor
0.1
937
Tumor
0.1
983
Tumor
0.1
447
Tumor
0.1
483
Tumor
0.1
863
Tumor
0.1
298
Normal
0.1
113
Tumor
0.1
554
Normal
0.1
862
Normal
0.1
112
Tumor
0.1
815
Tumor
0.1
141
Tumor
0.1
984
Normal
0.1
355
Tumor
0.1
283
Tumor
0.1
741
Tumor
0.1
944
Normal
0.1
535
Tumor
0.0
465
Tumor
0.0
435
Tumor
0.0
391
Tumor
0.0
327
Tumor
0.0
477
Tumor
0.0
387
Tumor
0.0
277
Tumor
0.0
482
Normal
0.0
967
Tumor
0.0
462
Normal
0.0
472
Normal
0.0
128
Normal
0.0
474
Normal
0.0
546
Normal
0.0
135
Tumor
0.0
538
Normal
0.0
384
Normal
0.0
488
Normal
0.0
873
Tumor
0.0
365
Tumor
0.0
217
Tumor
0.0
132
Normal
0.0
952
Normal
0.0
1014
Normal
0.0
356
Normal
0.0
714
Normal
0.0
186
Normal
0.0
572
Normal
0.0
568
Normal
0.0
224
Normal
0.0
498
Normal
-0.1
744
Normal
-0.1
564
Normal
-0.1
852
Normal
-0.1
142
Normal
-0.1
627
Tumor
-0.1
362
Normal
-0.1
778
Normal
-0.1
1016
Normal
-0.1
824
Normal
-0.1
297
Tumor
-0.1
412
Normal
-0.1
574
Normal
-0.1
148
Normal
-0.1
111
Normal
-0.1
618
Normal
-0.1
777
Tumor
-0.1
146
Normal
-0.1
518
Normal
-0.1
196
Normal
-0.1
352
Normal
-0.1
813
Tumor
-0.1
126
Normal
-0.1
663
Tumor
-0.1
376
Normal
-0.1
481
Tumor
-0.1
746
Normal
-0.1
636
Normal
-0.1
534
Normal
-0.1
525
Tumor
-0.1
647
Tumor
-0.1
393
Tumor
-0.1
211
Tumor
-0.1
172
Normal
-0.1
628
Normal
-0.1
914
Normal
-0.1
284
Normal
-0.1
528
Normal
-0.1
513
Tumor
-0.1
363
Tumor
-0.1
938
Normal
-0.1
436
Normal
-0.1
982
Normal
-0.1
468
Normal
-0.1
1045
Tumor
-0.1
858
Normal
-0.1
924
Normal
-0.1
213
Tumor
-0.1
922
Normal
-0.1
816
Normal
-0.1
818
Normal
-0.1
232
Normal
-0.1
494
Normal
-0.1
516
Normal
-0.1
185
Tumor
-0.1
353
Tumor
-0.2
1027
Tumor
-0.2
721
Tumor
-0.2
571
Tumor
-0.2
366
Normal
-0.2
696
Normal
-0.2
878
Normal
-0.2
1026
Normal
-0.2
114
Normal
-0.2
478
Normal
-0.2
912
Normal
-0.2
228
Normal
-0.2
664
Normal
-0.2
162
Normal
-0.2
138
Normal
-0.2
124
Normal
-0.2
415
Tumor
-0.2
214
Normal
-0.2
884
Normal
-0.2
367
Tumor
-0.2
312
Normal
-0.2
557
Tumor
-0.2
648
Normal
-0.2
428
Normal
-0.2
672
Normal
-0.2
278
Normal
-0.2
396
Normal
-0.2
864
Normal
-0.2
642
Normal
-0.2
332
Normal
-0.2
188
Normal
-0.2
328
Normal
-0.2
814
Normal
-0.2
635
Tumor
-0.2
421
Tumor
-0.2
416
Normal
-0.2
964
Normal
-0.2
136
Normal
-0.2
698
Normal
-0.2
866
Normal
-0.2
375
Tumor
-0.2
666
Normal
-0.2
1022
Normal
-0.2
913
Tumor
-0.2
954
Normal
-0.2
257
Tumor
-0.2
926
Normal
-0.2
456
Normal
-0.2
364
Normal
-0.2
192
Normal
-0.2
716
Normal
-0.2
882
Normal
-0.2
1046
Normal
-0.2
466
Normal
-0.2
258
Normal
-0.3
342
Normal
-0.3
414
Normal
-0.3
313
Tumor
-0.3
956
Normal
-0.3
563
Tumor
-0.3
978
Normal
-0.3
286
Normal
-0.3
434
Normal
-0.3
314
Normal
-0.3
722
Normal
-0.3
354
Normal
-0.3
558
Normal
-0.3
386
Normal
-0.3
426
Normal
-0.3
918
Normal
-0.3
212
Normal
-0.3
218
Normal
-0.3
686
Normal
-0.3
191
Tumor
-0.3
388
Normal
-0.3
966
Normal
-0.3
957
Tumor
-0.3
1032
Normal
-0.3
392
Normal
-0.3
446
Normal
-0.3
616
Normal
-0.3
536
Normal
-0.3
527
Tumor
-0.3
756
Normal
-0.3
867
Tumor
-0.3
492
Normal
-0.3
222
Normal
-0.3
955
Tumor
-0.3
723
Tumor
-0.3
1028
Normal
-0.3
311
Tumor
-0.3
968
Normal
-0.3
424
Normal
-0.3
358
Normal
-0.3
728
Normal
-0.3
786
Normal
-0.3
413
Tumor
-0.3
432
Normal
-0.3
738
Normal
-0.4
343
Tumor
-0.4
394
Normal
-0.4
448
Normal
-0.4
1042
Normal
-0.4
524
Normal
-0.4
464
Normal
-0.4
361
Tumor
-0.4
145
Tumor
-0.4
227
Tumor
-0.4
976
Normal
-0.4
272
Normal
-0.4
357
Tumor
-0.4
742
Normal
-0.4
874
Normal
-0.4
383
Tumor
-0.4
514
Normal
-0.4
916
Normal
-0.4
1041
Tumor
-0.4
455
Tumor
-0.4
526
Normal
-0.4
385
Tumor
-0.4
491
Tumor
-0.4
662
Normal
-0.4
344
Normal
-0.4
423
Tumor
-0.4
958
Normal
-0.4
195
Tumor
-0.4
262
Normal
-0.4
444
Normal
-0.4
823
Tumor
-0.4
268
Normal
-0.4
697
Tumor
-0.5
443
Tumor
-0.5
422
Normal
-0.5
1044
Normal
-0.5
427
Tumor
-0.5
452
Normal
-0.5
445
Tumor
-0.5
125
Tumor
-0.5
981
Tumor
-0.5
713
Tumor
-0.5
953
Tumor
-0.5
868
Normal
-0.6
925
Tumor
-0.6
395
Tumor
-0.6
368
Normal
-0.8
917
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
