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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACACB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
48.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
45.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
31.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACACB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.6
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
54.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
38.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
36.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
31.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
436
Normal
1.2
742
Normal
1.1
186
Normal
1.1
462
Normal
1.0
1046
Normal
1.0
222
Normal
0.9
298
Normal
0.9
342
Normal
0.9
648
Normal
0.9
414
Normal
0.9
148
Normal
0.9
464
Normal
0.9
938
Normal
0.9
528
Normal
0.9
666
Normal
0.8
1013
Tumor
0.8
1022
Normal
0.8
926
Normal
0.8
568
Normal
0.8
394
Normal
0.8
136
Normal
0.8
862
Normal
0.8
912
Normal
0.8
132
Normal
0.8
482
Normal
0.8
664
Normal
0.8
172
Normal
0.8
111
Normal
0.8
424
Normal
0.7
162
Normal
0.7
1014
Normal
0.7
428
Normal
0.7
314
Normal
0.7
723
Tumor
0.7
858
Normal
0.7
756
Normal
0.7
714
Normal
0.7
884
Normal
0.7
466
Normal
0.7
864
Normal
0.7
1016
Normal
0.7
484
Normal
0.7
258
Normal
0.7
432
Normal
0.7
534
Normal
0.6
446
Normal
0.6
278
Normal
0.6
982
Normal
0.6
616
Normal
0.6
452
Normal
0.6
526
Normal
0.6
882
Normal
0.6
554
Normal
0.6
1026
Normal
0.6
746
Normal
0.6
218
Normal
0.6
786
Normal
0.6
964
Normal
0.6
392
Normal
0.6
488
Normal
0.6
1044
Normal
0.6
628
Normal
0.6
232
Normal
0.6
356
Normal
0.6
448
Normal
0.6
738
Normal
0.6
196
Normal
0.6
716
Normal
0.5
465
Tumor
0.5
922
Normal
0.5
228
Normal
0.5
358
Normal
0.5
393
Tumor
0.5
662
Normal
0.5
472
Normal
0.5
572
Normal
0.5
777
Tumor
0.5
327
Tumor
0.5
824
Normal
0.5
523
Tumor
0.5
142
Normal
0.5
365
Tumor
0.5
866
Normal
0.5
874
Normal
0.5
618
Normal
0.5
468
Normal
0.5
114
Normal
0.5
272
Normal
0.5
816
Normal
0.5
412
Normal
0.4
698
Normal
0.4
352
Normal
0.4
332
Normal
0.4
128
Normal
0.4
663
Tumor
0.4
978
Normal
0.4
868
Normal
0.4
696
Normal
0.4
376
Normal
0.4
818
Normal
0.4
924
Normal
0.4
422
Normal
0.4
728
Normal
0.4
518
Normal
0.4
514
Normal
0.4
878
Normal
0.4
966
Normal
0.4
642
Normal
0.4
778
Normal
0.4
558
Normal
0.4
388
Normal
0.3
423
Tumor
0.3
494
Normal
0.3
1032
Normal
0.3
366
Normal
0.3
426
Normal
0.3
286
Normal
0.3
564
Normal
0.3
513
Tumor
0.3
456
Normal
0.3
487
Tumor
0.3
284
Normal
0.3
567
Tumor
0.3
918
Normal
0.3
267
Tumor
0.3
384
Normal
0.3
354
Normal
0.3
914
Normal
0.3
627
Tumor
0.3
126
Normal
0.3
328
Normal
0.3
722
Normal
0.3
138
Normal
0.3
968
Normal
0.2
852
Normal
0.2
1043
Tumor
0.2
362
Normal
0.2
976
Normal
0.2
636
Normal
0.2
944
Normal
0.2
546
Normal
0.2
744
Normal
0.2
147
Tumor
0.2
257
Tumor
0.2
141
Tumor
0.2
357
Tumor
0.2
474
Normal
0.2
161
Tumor
0.2
146
Normal
0.2
137
Tumor
0.2
952
Normal
0.1
686
Normal
0.1
516
Normal
0.1
396
Normal
0.1
124
Normal
0.1
672
Normal
0.1
361
Tumor
0.1
434
Normal
0.1
212
Normal
0.1
481
Tumor
0.1
515
Tumor
0.1
533
Tumor
0.1
461
Tumor
0.1
615
Tumor
0.1
364
Normal
0.1
647
Tumor
0.1
574
Normal
0.1
416
Normal
0.0
745
Tumor
0.0
1028
Normal
0.0
953
Tumor
0.0
984
Normal
0.0
865
Tumor
0.0
958
Normal
0.0
262
Normal
0.0
954
Normal
0.0
957
Tumor
0.0
755
Tumor
0.0
421
Tumor
-0.1
368
Normal
-0.1
956
Normal
-0.1
214
Normal
-0.1
353
Tumor
-0.1
344
Normal
-0.1
188
Normal
-0.1
145
Tumor
-0.1
1042
Normal
-0.2
386
Normal
-0.2
192
Normal
-0.2
411
Tumor
-0.2
224
Normal
-0.2
125
Tumor
-0.2
785
Tumor
-0.2
573
Tumor
-0.2
112
Tumor
-0.2
187
Tumor
-0.2
113
Tumor
-0.3
355
Tumor
-0.3
217
Tumor
-0.3
277
Tumor
-0.3
491
Tumor
-0.3
538
Normal
-0.3
195
Tumor
-0.4
981
Tumor
-0.4
312
Normal
-0.4
313
Tumor
-0.4
916
Normal
-0.4
524
Normal
-0.4
223
Tumor
-0.5
477
Tumor
-0.5
497
Tumor
-0.5
478
Normal
-0.5
455
Tumor
-0.5
268
Normal
-0.5
695
Tumor
-0.6
955
Tumor
-0.6
873
Tumor
-0.6
297
Tumor
-0.6
135
Tumor
-0.6
527
Tumor
-0.6
498
Normal
-0.6
444
Normal
-0.7
851
Tumor
-0.7
492
Normal
-0.7
737
Tumor
-0.7
415
Tumor
-0.7
451
Tumor
-0.7
857
Tumor
-0.7
191
Tumor
-0.7
375
Tumor
-0.7
813
Tumor
-0.8
537
Tumor
-0.8
427
Tumor
-0.8
617
Tumor
-0.8
425
Tumor
-0.8
433
Tumor
-0.8
867
Tumor
-0.8
185
Tumor
-0.8
883
Tumor
-0.8
463
Tumor
-0.8
863
Tumor
-0.9
445
Tumor
-0.9
913
Tumor
-0.9
536
Normal
-0.9
741
Tumor
-0.9
127
Tumor
-0.9
171
Tumor
-0.9
943
Tumor
-1.0
563
Tumor
-1.0
525
Tumor
-1.0
814
Normal
-1.0
447
Tumor
-1.0
571
Tumor
-1.0
721
Tumor
-1.0
261
Tumor
-1.0
915
Tumor
-1.0
413
Tumor
-1.1
391
Tumor
-1.1
1045
Tumor
-1.1
923
Tumor
-1.1
925
Tumor
-1.1
557
Tumor
-1.1
823
Tumor
-1.1
1015
Tumor
-1.2
713
Tumor
-1.2
467
Tumor
-1.2
517
Tumor
-1.2
213
Tumor
-1.2
443
Tumor
-1.2
665
Tumor
-1.2
383
Tumor
-1.2
727
Tumor
-1.2
341
Tumor
-1.2
123
Tumor
-1.2
983
Tumor
-1.2
387
Tumor
-1.2
435
Tumor
-1.2
283
Tumor
-1.2
431
Tumor
-1.3
343
Tumor
-1.3
635
Tumor
-1.3
131
Tumor
-1.3
911
Tumor
-1.3
671
Tumor
-1.4
977
Tumor
-1.4
231
Tumor
-1.4
1025
Tumor
-1.4
917
Tumor
-1.4
331
Tumor
-1.4
483
Tumor
-1.5
227
Tumor
-1.5
271
Tumor
-1.5
221
Tumor
-1.5
351
Tumor
-1.5
473
Tumor
-1.5
937
Tumor
-1.5
311
Tumor
-1.5
881
Tumor
-1.5
363
Tumor
-1.5
697
Tumor
-1.5
367
Tumor
-1.5
861
Tumor
-1.5
877
Tumor
-1.6
967
Tumor
-1.6
395
Tumor
-1.6
685
Tumor
-1.6
493
Tumor
-1.6
1027
Tumor
-1.6
471
Tumor
-1.6
715
Tumor
-1.7
1021
Tumor
-1.7
285
Tumor
-1.7
1041
Tumor
-1.7
815
Tumor
-1.7
545
Tumor
-1.7
965
Tumor
-1.7
921
Tumor
-1.7
661
Tumor
-1.7
975
Tumor
-1.8
641
Tumor
-1.8
553
Tumor
-1.8
951
Tumor
-1.8
535
Tumor
-1.8
385
Tumor
-1.9
1031
Tumor
-1.9
817
Tumor
-1.9
743
Tumor
-1.9
724
Normal
-1.9
963
Tumor
-1.9
211
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
